BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0276.p
         (386 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313855|ref|YP_003777947.1| hypothetical protein Hsero_4573...   759   0.0  

>gi|300313855|ref|YP_003777947.1| hypothetical protein Hsero_4573
           [Herbaspirillum seropedicae SmR1]
          Length = 386

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/386 (98%), Positives = 381/386 (98%)

Query: 1   MNDNSWLHLTTQDPAWTLPTDLASVDRFGARDCGWVEQMQPFIAHLCPPEGRVLDPFCGF 60
           MNDNSWLHLT QDPAWTLP DLA VDRFGARDCGWVEQMQPFIAHLCPPEGRVLDPFCGF
Sbjct: 1   MNDNSWLHLTAQDPAWTLPADLAGVDRFGARDCGWVEQMQPFIAHLCPPEGRVLDPFCGF 60

Query: 61  GSTLVAAHSQGRAGIGIEVDGSRVALTRQRLQRLSPEAAEPAQQLIHGDAITLLPQLPPV 120
           GSTLVAAHSQGRAGIGIEVDGSRVALTRQRLQRLSPEAAEPAQQLIHGDAITLLPQLPPV
Sbjct: 61  GSTLVAAHSQGRAGIGIEVDGSRVALTRQRLQRLSPEAAEPAQQLIHGDAITLLPQLPPV 120

Query: 121 DLVLSNVPYFGCRWPEQATAAQPGQLYASQTYAGFLGMLERLLAGLRCCLRPGGWLVLCA 180
           DLVLSN+PYFGCRWPEQATAAQ GQLYA QTYAGFLGMLERLLAGLRCCLRPGGWLVLCA
Sbjct: 121 DLVLSNIPYFGCRWPEQATAAQSGQLYAMQTYAGFLGMLERLLAGLRCCLRPGGWLVLCA 180

Query: 181 ENLRVGEHFVPLAWDLARLMADRFSFVEERILLYDRASQPAAPGQMRSNRAHEYALLARH 240
           ENLRVGEHFVPLAWDLARLMADRFSFVEERILLYDRASQPAAPGQMRSNRAHEYALLARH
Sbjct: 181 ENLRVGEHFVPLAWDLARLMADRFSFVEERILLYDRASQPAAPGQMRSNRAHEYALLARH 240

Query: 241 LPPPIDTAQTLAVLQAMQSAHPGFVVYGSFARWLQGLPLAHAPADADLLLPDDPQLLVAL 300
           LPPPIDTAQTLAVLQAMQSAHPGFVVYGSFARWLQGLPLAHAPADADLLLPDDPQLLVAL
Sbjct: 241 LPPPIDTAQTLAVLQAMQSAHPGFVVYGSFARWLQGLPLAHAPADADLLLPDDPQLLVAL 300

Query: 301 CHWLEQQGFALTCWGAPFSAAMAAAGAALLPQRHYLRAVRLDRDGRLVRLDLCLRDQRHD 360
           CHWLEQQGFALTCWGAPFSAAMAAAGAALLPQRHYLRAVRLDRDGRLVRLDLCLRDQRHD
Sbjct: 301 CHWLEQQGFALTCWGAPFSAAMAAAGAALLPQRHYLRAVRLDRDGRLVRLDLCLRDQRHD 360

Query: 361 AAQLLPQAVMQAGLPLMPAELVQDAS 386
           AAQLLPQAVMQAGLPLMPAELVQDAS
Sbjct: 361 AAQLLPQAVMQAGLPLMPAELVQDAS 386


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,141,327
Number of extensions: 43407
Number of successful extensions: 208
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 299
Effective length of database: 1,207,925
Effective search space: 361169575
Effective search space used: 361169575
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)