BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0274.p
         (311 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313853|ref|YP_003777945.1| ornithine cyclodeaminase [Herba...   608   e-175
gi|300309407|ref|YP_003773499.1| ornithine cyclodeaminase [Herba...    59   6e-10

>gi|300313853|ref|YP_003777945.1| ornithine cyclodeaminase
           [Herbaspirillum seropedicae SmR1]
          Length = 306

 Score =  608 bits (1567), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 304/306 (99%), Positives = 304/306 (99%)

Query: 6   MKFLSNQQISELLTTEDAIAAMREAFAGAAEGAHQGRVRTSASNGVMLSMMGAVIPAAGI 65
           MKFLSNQQISELLTTEDAIAAMREAFAGAAEGAHQGRVRTSASNGVMLSMMGAVIPAAGI
Sbjct: 1   MKFLSNQQISELLTTEDAIAAMREAFAGAAEGAHQGRVRTSASNGVMLSMMGAVIPAAGI 60

Query: 66  AGAKVYTTIKGQFRFVIQLFSTETGAPLCTMEGDAMTGLRTAAATAVACDALARPDAGVL 125
           AGAKVYTTIKGQFRFVIQLFSTETGAPLCTMEGDAMTGLRTAAATAVACDALARPDAGVL
Sbjct: 61  AGAKVYTTIKGQFRFVIQLFSTETGAPLCTMEGDAMTGLRTAAATAVACDALARPDAGVL 120

Query: 126 AVIGTGVQARSHIPALLQVRPFKEVLIAGRSGQQALAEEVTRTLGVPARMVSIDEAAAQA 185
           AVIGTGVQARSHIPALLQVRPFKEVLIAGRSGQQALAEEVTRTLGVPARMVSIDEAAAQA
Sbjct: 121 AVIGTGVQARSHIPALLQVRPFKEVLIAGRSGQQALAEEVTRTLGVPARMVSIDEAAAQA 180

Query: 186 DVLVTVTRSATPLFDGALLRPGAFVAAVGASKANVRELDDTAIGRAAALFVEWKPQAQQE 245
           DVLVTVTRSATPLFDG LLRPGAFVAAVGASKANVRELDDTAIGRAAALFVEWKPQAQQE
Sbjct: 181 DVLVTVTRSATPLFDGELLRPGAFVAAVGASKANVRELDDTAIGRAAALFVEWKPQAQQE 240

Query: 246 AGDLVQCPPGVFDWAQVMELAQAVDGSMPYQRRPDDIVIYKGIGIGLEDVALAGLAYRKA 305
           AGDLVQC PGVFDWAQVMELAQAVDGSMPYQRRPDDIVIYKGIGIGLEDVALAGLAYRKA
Sbjct: 241 AGDLVQCAPGVFDWAQVMELAQAVDGSMPYQRRPDDIVIYKGIGIGLEDVALAGLAYRKA 300

Query: 306 CARYGW 311
           CARYGW
Sbjct: 301 CARYGW 306


>gi|300309407|ref|YP_003773499.1| ornithine cyclodeaminase
           [Herbaspirillum seropedicae SmR1]
          Length = 347

 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 96/215 (44%), Gaps = 15/215 (6%)

Query: 89  TGAPLCTMEGDAMTGLRTAAATAVACDALARPDAGVLAVIGTGVQARSHIPALLQVRPFK 148
           +G P    E    T LRTAA + +A   +AR D+ V+AVIG G Q+   I A       +
Sbjct: 96  SGYPRLLSELTLTTALRTAATSVLAARQMARSDSRVMAVIGNGAQSEFQILAFHHQMGIE 155

Query: 149 EVLIAGRSGQQALAEEVTRTLGVPARM-----VSIDEAAAQADVLVTVT--RSATPLFDG 201
            V +       A    + R L   + +      S  EA   AD++ T+T  +    +   
Sbjct: 156 VVRL--YDTDPAATARLMRNLRACSGLQLIPCASAAEAVRGADIVTTLTADKRRACIISP 213

Query: 202 ALLRPGAFVAAVGASKANVRELDDTAIGRAAALFVEWKPQAQQEAGDLVQCPPGVFDWAQ 261
           A+L  G  + AVG       EL    + +AA + VE+ PQ++ E G++ Q P        
Sbjct: 214 AMLEAGMHLNAVGGDCPGKTELHADVL-KAARVVVEFAPQSRIE-GEVQQMPADF----P 267

Query: 262 VMELAQAVDGSMPYQRRPDDIVIYKGIGIGLEDVA 296
           V EL Q + G  P +    ++ ++  +G  LED A
Sbjct: 268 VTELWQVLAGHAPGRSSAAEVTVFDSVGFALEDFA 302


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 834,047
Number of extensions: 32971
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 3
Length of query: 311
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,217,395
Effective search space: 275131270
Effective search space used: 275131270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)