BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0272.p
         (207 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313851|ref|YP_003777943.1| glutathione S-transferase [Herb...   421   e-119
gi|300310406|ref|YP_003774498.1| glutathione S-transferase [Herb...    60   9e-11

>gi|300313851|ref|YP_003777943.1| glutathione S-transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 207

 Score =  421 bits (1082), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/207 (98%), Positives = 205/207 (99%)

Query: 1   MLKIYGRDSSINVRKVLWACAELGIAFEREDWGAGFRPTSEPAFLTMNPNAMVPVIEEDG 60
           MLKIYGRDSSINVRKVLWACAELGIAFEREDWGAGFRPTSEPAFL MNPNAMVPVIEEDG
Sbjct: 1   MLKIYGRDSSINVRKVLWACAELGIAFEREDWGAGFRPTSEPAFLAMNPNAMVPVIEEDG 60

Query: 61  FVLWESNAIIRYLANRHGGAALYPLQAQARARVDQWIDWQASDLNRAWSYAYLTLVRKSP 120
           FVLWESNAIIRYLANRHGGAALYPLQAQARARVDQWIDWQASDLNRAWSYAYLTLVRKSP
Sbjct: 61  FVLWESNAIIRYLANRHGGAALYPLQAQARARVDQWIDWQASDLNRAWSYAYLTLVRKSP 120

Query: 121 AHGNAQQVAASIADWTRFMEVLEQQLQHSGGYVAGAEFTLADIPVGLSVNRWFGTPFEHP 180
           AHGNAQQVAASIADWTRFMEVLEQQLQHSGGYVAGAEFTLADI VGLSVNRWFGTPFEHP
Sbjct: 121 AHGNAQQVAASIADWTRFMEVLEQQLQHSGGYVAGAEFTLADISVGLSVNRWFGTPFEHP 180

Query: 181 PLPAVAAYYDRLTEREGFRRYGRNGMA 207
           PLPAVAAYYDRLTER+GFRRYGRNGMA
Sbjct: 181 PLPAVAAYYDRLTERDGFRRYGRNGMA 207


>gi|300310406|ref|YP_003774498.1| glutathione S-transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score = 60.5 bits (145), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 6/203 (2%)

Query: 2   LKIYGRDSSINVRKVLWACAELGIAFEREDWGAGFRPTSEPAFLTMNPNAMVPVIEEDGF 61
           +KI+    S +  + +   + LG+  E  +         +PAFL +NP   VPV+E+   
Sbjct: 1   MKIHHHPLSGHAHRAVLFASLLGLPAELVEVDLAAGAHKKPAFLALNPFGQVPVLEDGEV 60

Query: 62  VLWESNAIIRYLANRHGGAALYPLQAQARARVDQWIDWQASDLNRAWSYAYLTLVRKSPA 121
           V+ +SNAI+ YLA + G +   P  AQ  A V +W+   A +L  A+  A   LV    A
Sbjct: 61  VIADSNAILVYLAKKAGRSDWLPEDAQGAAAVQRWLSVAAGEL--AYGPAAARLVTVFGA 118

Query: 122 HGNAQQVAASIADWTRFMEVLEQQLQHSGGYVAGAEFTLADIPVGLSVNRWFGTPFEHPP 181
             NA++V   I      +  LEQ L     ++A    T+AD+ V   + R      +   
Sbjct: 119 AFNAEEV---IQRAHLLLGRLEQHLAKR-DWLAADHPTIADVAVYSYLARAPEGNVDLRG 174

Query: 182 LPAVAAYYDRLTEREGFRRYGRN 204
            P V  +  R+    GF  + + 
Sbjct: 175 YPGVQGFLQRIEALPGFVPFAQT 197


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 739,897
Number of extensions: 31430
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 2
Length of query: 207
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,236,335
Effective search space: 155778210
Effective search space used: 155778210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)