BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0269.p (378 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbasp... 738 0.0 gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Her... 276 3e-75 gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH... 116 3e-27 >gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbaspirillum seropedicae SmR1] Length = 362 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/362 (99%), Positives = 361/362 (99%) Query: 17 MSALFQPFKLKDVSLRNRIAVPPMCQYMAVEGKVNDWHLSHYASIARGGAGLVIVEATAV 76 MSALFQPFKLKDVSLRNRIAVPPMCQYMAVEGKVNDWHLSHYASIARGGAGLVIVEATAV Sbjct: 1 MSALFQPFKLKDVSLRNRIAVPPMCQYMAVEGKVNDWHLSHYASIARGGAGLVIVEATAV 60 Query: 77 SPEGRITPGCTGIWSDELGQAFVPVVQAIKAAGAVPGIQIGHAGRKASANRPWEGDDHIA 136 SPEGRITPGCTGIWSD LGQAFVPVVQAIKAAGAVPGIQIGHAGRKASANRPWEGDDHIA Sbjct: 61 SPEGRITPGCTGIWSDALGQAFVPVVQAIKAAGAVPGIQIGHAGRKASANRPWEGDDHIA 120 Query: 137 ADDARGWDTLSPSAIAYGRGLPKVPKAMSLDDIARVRQDFVNAAVRAREAGFEWLELHFA 196 ADDARGWDTLSPSAIAYGRGLPKVPKAMSLDDIARVRQDFVNAAVRAREAGFEWLELHFA Sbjct: 121 ADDARGWDTLSPSAIAYGRGLPKVPKAMSLDDIARVRQDFVNAAVRAREAGFEWLELHFA 180 Query: 197 HGYLGQSFFSAHANQRDDLYGGSVENRARFLLETLRAVREVWPEHLALTVRFGVLEYDGR 256 HGYLGQSFFSAHANQRDDLYGGSVENRARFLLETLRAVREVWPEHLALTVRFGVLEYDGR Sbjct: 181 HGYLGQSFFSAHANQRDDLYGGSVENRARFLLETLRAVREVWPEHLALTVRFGVLEYDGR 240 Query: 257 DEETLMESIGVVRQFKDSGMDMISVTIGFTIPEVQIPWGPAFLGPIAKRVREEAAVPVSS 316 DEETLMESIGVVRQFKDSGMDMISVTIGFTIPEVQIPWGPAFLGPIAKRVREEAAVPVSS Sbjct: 241 DEETLMESIGVVRQFKDSGMDMISVTIGFTIPEVQIPWGPAFLGPIAKRVREEAAVPVSS 300 Query: 317 AWGFGTPALAEQAVKDGQLDLVMVGRSHLVNPHWTYQAAKELGVERPSWTLPAPYAHWLE 376 AWGFGTPALAEQAVKDGQLDLVMVGRSHLVNPHWTYQAAKELGVERPSWTLPAPYAHWLE Sbjct: 301 AWGFGTPALAEQAVKDGQLDLVMVGRSHLVNPHWTYQAAKELGVERPSWTLPAPYAHWLE 360 Query: 377 RY 378 RY Sbjct: 361 RY 362 >gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 276 bits (705), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 162/345 (46%), Positives = 212/345 (61%), Gaps = 6/345 (1%) Query: 16 IMSALFQPFKLKDVSLRNRIAVPPMCQYMAVEGKVNDWHLSHYASIARGGAGLVIVEATA 75 + S LF P L+ V+L NRIAV PMCQY A +G VNDWHL H S A GGAGLV++EATA Sbjct: 1 MSSHLFSPLPLRGVTLPNRIAVSPMCQYSAEDGFVNDWHLVHLGSRAVGGAGLVLMEATA 60 Query: 76 VSPEGRITPGCTGIWSDELGQAFVPVVQAIKAAGAVPGIQIGHAGRKASANRPWEGDDHI 135 V EGRI+ GIW DE + + I+ GAVPGIQ+ HAGRK+S RPW+G Sbjct: 61 VVAEGRISSADLGIWKDEHIAPLRRITRFIEQQGAVPGIQLAHAGRKSSILRPWDGPAGS 120 Query: 136 AADDARGWDTLSPSAIAYGRGLPKVPKAMSLDDIARVRQDFVNAAVRAREAGFEWLELHF 195 A GW +PSA+ + G P+AMS++ I + Q F +AA RA AGF+ +ELH Sbjct: 121 VPPSAGGWTPQAPSALPFDDGY-STPQAMSVEQIGALVQAFADAAQRALAAGFKVIELHG 179 Query: 196 AHGYLGQSFFSAHANQRDDLYGGSVENRARFLLETLRAVREVWPEHLALTVRFGVLEY-D 254 AHGYLG F S +NQR D YGGS ENR RFLLE RA R VWPE L L VR ++ D Sbjct: 180 AHGYLGHQFLSPLSNQRSDEYGGSFENRIRFLLEITRATRAVWPEELPLLVRLSATDWVD 239 Query: 255 GRDEETLMESIGVVRQFKDSGMDMISVTIGFTIPEVQIPWGPAFLGPIAKRVREEAAVPV 314 G T E++ + ++ ++ G+D++ V+ G P+ IP GP + A RV+ EA + Sbjct: 240 G--GWTPEETVTLSQRLRELGVDLVDVSSGGNAPKAVIPVGPGYQTSFAARVKAEAGI-A 296 Query: 315 SSAWGFGTPAL-AEQAVKDGQLDLVMVGRSHLVNPHWTYQAAKEL 358 S A G T A+ AE ++ GQ DLV++ R L +P+W AA++L Sbjct: 297 SGAVGMITDAIQAEHILRTGQADLVLLARELLRDPYWPLHAAQQL 341 >gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Herbaspirillum seropedicae SmR1] Length = 366 Score = 116 bits (290), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 122/233 (52%), Gaps = 26/233 (11%) Query: 18 SALFQPFKLKDVSLRNRIAVPPMCQYMAVEGKV-NDWHLSHYASIARGGAGLVIVEATAV 76 S LF+P +L V L+NRI + P+ + A G V +D +YA R GAGL+I EAT + Sbjct: 8 SDLFKPVQLGAVQLQNRIVMAPLTRSRAQAGDVPSDLAAEYYAQ--RAGAGLIIAEATQI 65 Query: 77 SPEGRITPGCTGIWSDELGQAFVPVVQAIKAAGAVPGIQIGHAGRKASANRPWEGDDHIA 136 SPEG+ GI++D A+ + A+ A G +Q+ H GR I+ Sbjct: 66 SPEGKGYAWTPGIYNDAHVAAWKKITDAVHAKGGRIFLQLWHVGR-------------IS 112 Query: 137 ADDARGWDTL--SPSAIA-YGRGLPK-------VPKAMSLDDIARVRQDFVNAAVRAREA 186 D + L +PSA+ G+ + P+A+ ++ + + + AA + +A Sbjct: 113 HPDLQPGHALPVAPSAVQPEGQAFTESGFKPFVTPRALEAAELPAIVEQYKKAAQLSMQA 172 Query: 187 GFEWLELHFAHGYLGQSFFSAHANQRDDLYGGSVENRARFLLETLRAVREVWP 239 GF+ +E+H A+GYL F NQR D YGGS+ENRAR LLE ++AV V P Sbjct: 173 GFDGVEIHAANGYLLDQFLRDKTNQRTDGYGGSIENRARLLLEVVQAVTSVVP 225 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,287,510 Number of extensions: 57591 Number of successful extensions: 169 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 3 Length of query: 378 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 291 Effective length of database: 1,207,925 Effective search space: 351506175 Effective search space used: 351506175 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)