BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0261.p
         (94 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313841|ref|YP_003777933.1| HsdR-like type I restriction mo...   191   9e-51

>gi|300313841|ref|YP_003777933.1| HsdR-like type I restriction
          modification system protein [Herbaspirillum seropedicae
          SmR1]
          Length = 1049

 Score =  191 bits (485), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 92/94 (97%), Positives = 92/94 (97%)

Query: 1  MTTFAKESDFEVALIDVLRQRGWGDADVIKNPTEADLLANWKQILFENNRGKDSLNEVPL 60
          MTTFAKESDFEVALIDVLRQRGWGDADVIKNPTEADLLANWKQILFENNR KDSLNEVPL
Sbjct: 1  MTTFAKESDFEVALIDVLRQRGWGDADVIKNPTEADLLANWKQILFENNRAKDSLNEVPL 60

Query: 61 TDSEMQQIMEQITALRTPLKLNGFINGKTVSIIR 94
          TDSEMQQIMEQITALRTPLKLNGFINGKTVSI R
Sbjct: 61 TDSEMQQIMEQITALRTPLKLNGFINGKTVSITR 94


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 269,122
Number of extensions: 9211
Number of successful extensions: 22
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 94
Length of database: 1,619,870
Length adjustment: 63
Effective length of query: 31
Effective length of database: 1,321,565
Effective search space: 40968515
Effective search space used: 40968515
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)