BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0260.p
         (316 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313841|ref|YP_003777933.1| HsdR-like type I restriction mo...   647   0.0  

>gi|300313841|ref|YP_003777933.1| HsdR-like type I restriction
            modification system protein [Herbaspirillum seropedicae
            SmR1]
          Length = 1049

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/316 (100%), Positives = 316/316 (100%)

Query: 1    MKRNVAAAVKLYSGDKPIGLFADRLPINLERMNACFVEICAIFSAAGITDFSKLPDDLAA 60
            MKRNVAAAVKLYSGDKPIGLFADRLPINLERMNACFVEICAIFSAAGITDFSKLPDDLAA
Sbjct: 734  MKRNVAAAVKLYSGDKPIGLFADRLPINLERMNACFVEICAIFSAAGITDFSKLPDDLAA 793

Query: 61   RAAFAKQFNRFSAILEAARIQGFTWEKSVYEFGDDAKMQVTLTISHHQYLTLLQRYKELG 120
            RAAFAKQFNRFSAILEAARIQGFTWEKSVYEFGDDAKMQVTLTISHHQYLTLLQRYKELG
Sbjct: 794  RAAFAKQFNRFSAILEAARIQGFTWEKSVYEFGDDAKMQVTLTISHHQYLTLLQRYKELG 853

Query: 121  GGSVGSGESIPFDIDSHITEIDTGKIDADYMNSRFAKFLKVLHGGDEQAKEATLAELHRS 180
            GGSVGSGESIPFDIDSHITEIDTGKIDADYMNSRFAKFLKVLHGGDEQAKEATLAELHRS
Sbjct: 854  GGSVGSGESIPFDIDSHITEIDTGKIDADYMNSRFAKFLKVLHGGDEQAKEATLAELHRS 913

Query: 181  FTSLSQEDQRIAEIFLHDIQRGDVQIDPNRTFRDYLADYQAQAKNKEIEAIVEGLGIDAS 240
            FTSLSQEDQRIAEIFLHDIQRGDVQIDPNRTFRDYLADYQAQAKNKEIEAIVEGLGIDAS
Sbjct: 914  FTSLSQEDQRIAEIFLHDIQRGDVQIDPNRTFRDYLADYQAQAKNKEIEAIVEGLGIDAS 973

Query: 241  KLLALMNAKTTDVNLNEFGRFDALLATVDKQKAKAYFEAQEGKSIPAFKVNIKTENLLRM 300
            KLLALMNAKTTDVNLNEFGRFDALLATVDKQKAKAYFEAQEGKSIPAFKVNIKTENLLRM
Sbjct: 974  KLLALMNAKTTDVNLNEFGRFDALLATVDKQKAKAYFEAQEGKSIPAFKVNIKTENLLRM 1033

Query: 301  FIVHGDFALDVSNEKT 316
            FIVHGDFALDVSNEKT
Sbjct: 1034 FIVHGDFALDVSNEKT 1049


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 843,877
Number of extensions: 30650
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,217,395
Effective search space: 281218245
Effective search space used: 281218245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)