BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0259.p
         (558 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313840|ref|YP_003777932.1| hypothetical protein Hsero_4558...   914   0.0  
gi|300312223|ref|YP_003776315.1| hypothetical protein Hsero_2918...   122   7e-29

>gi|300313840|ref|YP_003777932.1| hypothetical protein Hsero_4558
           [Herbaspirillum seropedicae SmR1]
          Length = 555

 Score =  914 bits (2361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/558 (97%), Positives = 547/558 (98%), Gaps = 3/558 (0%)

Query: 1   MTTRNRSSAIIVSASLLGAVLALSACQKQDAPPPTAAGAPTTPTPAATPPYTPPTAEQLS 60
           MTTRNRSSAIIVSASLLGAVLALSACQKQDAPPPTAAGAPT PT AATPPYTPPTAEQLS
Sbjct: 1   MTTRNRSSAIIVSASLLGAVLALSACQKQDAPPPTAAGAPTAPTAAATPPYTPPTAEQLS 60

Query: 61  QMVAPIALFPDKLVAQVLAGATYPDQVVAANQWLGQNSALKGDILQAAEDKQPWDVSVKS 120
           QMVAPIALFPDKLVAQVLAGATYPDQVVAANQWLGQNSALKGDILQAAEDKQPWDVSVKS
Sbjct: 61  QMVAPIALFPDKLVAQVLAGATYPDQVVAANQWLGQNSALKGDILQAAEDKQPWDVSVKS 120

Query: 121 LTMFPAVLSQMAANPDWTRALGDAFVNDPNDVMNAIQALRLKAQQAGHLKSSPQLHVSTT 180
           LTMFPAVLSQMAANPDWTRALGDAFVNDPNDVMNAIQALRLKAQQAGHLKSSPQL VSTT
Sbjct: 121 LTMFPAVLSQMAANPDWTRALGDAFVNDPNDVMNAIQALRLKAQQAGHLKSSPQLRVSTT 180

Query: 181 ERSTSTVRYETPQPVYAGAPVIAPPPQTIVIESSQPDTVYVPRYDPAVVYGAPVPVYPGY 240
           ERSTSTVRYETPQPVYAGAPVIAPPPQTIVIESSQPDTVYVPRYDPAVVYGAPVPVYPGY
Sbjct: 181 ERSTSTVRYETPQPVYAGAPVIAPPPQTIVIESSQPDTVYVPRYDPAVVYGAPVPVYPGY 240

Query: 241 VYRPPSHVADDVVVGALSFGVGVFVGEAISHHSDWGWHDWGMHWGGPVQQDQPAVVYKNT 300
           VYRPPSHVAD+VVVGALSFGVGVFVGEAISHHSDWGWHDWGMHWGGPVQQDQPAVVYKNT
Sbjct: 241 VYRPPSHVADEVVVGALSFGVGVFVGEAISHHSDWGWHDWGMHWGGPVQQDQPAVVYKNT 300

Query: 301 SYVSHSTTVINRVTNNVIVNNNNRTVNNISNVNNVSNVNNVNNTRNVVNENRVDRRATIN 360
           SYVSHSTTVINRVTNNVIVNNNNRTVNNISNVNNVSNVNNVNNTRNVVNENRVDRR T+N
Sbjct: 301 SYVSHSTTVINRVTNNVIVNNNNRTVNNISNVNNVSNVNNVNNTRNVVNENRVDRRVTVN 360

Query: 361 NVDQRREAVQAAPAAMSMPHFTASDTRMGAAPHTPAPQQMAALHEHVAPAAPEHASAQHD 420
           NVDQRREAVQAAPAAMSMPHFTASD RMGA PH PAPQQMAALHEHVAPAAPEHASAQHD
Sbjct: 361 NVDQRREAVQAAPAAMSMPHFTASDARMGATPHAPAPQQMAALHEHVAPAAPEHASAQHD 420

Query: 421 ARVMAEEKKMAEERKMPPMPPMQQMQKEAAKPAMTRMENKEAPAAHMTPPVAHAQPAPQR 480
           ARVMAEEKKMAEERK   MPPMQQMQKEAAKPAMTRMENKEAPAAHMTPPVAHAQPAPQR
Sbjct: 421 ARVMAEEKKMAEERK---MPPMQQMQKEAAKPAMTRMENKEAPAAHMTPPVAHAQPAPQR 477

Query: 481 EEKMSMPTHAASMQQHEAQAHAPAPHPPAQHAAEAHEVEKHEAQQHQAEKHEEQKHAADK 540
           EEKMSMPTHAASMQQHEAQAHAPAPHPPAQHAAEAHEVEKHEAQQHQAEKHEEQKHAADK
Sbjct: 478 EEKMSMPTHAASMQQHEAQAHAPAPHPPAQHAAEAHEVEKHEAQQHQAEKHEEQKHAADK 537

Query: 541 HEAEKHEGEKREAQRHNG 558
           HEAEKHEGEKREAQ HNG
Sbjct: 538 HEAEKHEGEKREAQHHNG 555


>gi|300312223|ref|YP_003776315.1| hypothetical protein Hsero_2918
           [Herbaspirillum seropedicae SmR1]
          Length = 511

 Score =  122 bits (306), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 73/177 (41%), Positives = 96/177 (54%), Gaps = 25/177 (14%)

Query: 55  TAEQLSQMVAPIALFPDKLVAQVLAGATYPDQVVAANQWLGQNSALKGDILQAAEDKQPW 114
           T +QL QM+AP+AL+PD L+AQVL  +TYP +VV A +++     L+GD L  A    PW
Sbjct: 36  TQQQLDQMLAPVALYPDSLLAQVLMASTYPLEVVQAQRFIEARPGLQGDGLARAVAPMPW 95

Query: 115 DVSVKSLTMFPAVLSQMAANPDWTRALGDAFVNDPNDVMNAIQALRLKAQQAGHLKSSPQ 174
           D SVK+L  FP+VL+ M    DW + LG AF+     VM+ +Q LR +A+ AG L+SSPQ
Sbjct: 96  DPSVKALVQFPSVLAMMNDRLDWMQQLGQAFLGQQPAVMDTVQNLRERARIAGTLESSPQ 155

Query: 175 LHVSTTERSTSTVRYETPQPVYAGAPVIAPPPQTIVIESSQPDTVYVPRYDPAVVYG 231
             V   +     V      PV                    P  VYVP Y+P VVYG
Sbjct: 156 QRVVVQDDFIEIV------PV-------------------NPQVVYVPYYNPVVVYG 187


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.124    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 955,208
Number of extensions: 27578
Number of successful extensions: 179
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 2
Length of query: 558
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 468
Effective length of database: 1,193,720
Effective search space: 558660960
Effective search space used: 558660960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 133 (55.8 bits)