BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0257.p
         (340 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313838|ref|YP_003777930.1| glucosamine 6-phosphate synthas...   659   0.0  
gi|300313709|ref|YP_003777801.1| L-glutamine:D-fructose-6-phosph...   108   5e-25

>gi|300313838|ref|YP_003777930.1| glucosamine 6-phosphate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/336 (98%), Positives = 332/336 (98%)

Query: 5   MLKEARSAADYVAVQLTRDQDRYAALGARLRAAPPANIVTVARGSSDHAATYCAYLIMAR 64
           MLKEARSAADYVAVQLTRDQDRYAALGARLRAAPPANIVTVARGSSDHAATYCAYLIMAR
Sbjct: 1   MLKEARSAADYVAVQLTRDQDRYAALGARLRAAPPANIVTVARGSSDHAATYCAYLIMAR 60

Query: 65  LGRIVASLPMSLVTLNHAPLQVGDALAIAISQSGQSPDVVEPIRYFHAQGAATVALVNQA 124
           LGRIVASLPMSLVTLNHAPLQV DALAIA+SQSGQSPDVVEPIRYFHAQGA TVALVNQA
Sbjct: 61  LGRIVASLPMSLVTLNHAPLQVRDALAIAVSQSGQSPDVVEPIRYFHAQGATTVALVNQA 120

Query: 125 DSPLASAAQWSLPLHAGVESSVAATKSFIASLAASALLTAHWQDDAALLNALAQLPDALH 184
           DSPLASAAQWSLPLHAGVESSVAATKSFIASL ASALLTAHWQDDAALLNALAQLPDAL 
Sbjct: 121 DSPLASAAQWSLPLHAGVESSVAATKSFIASLVASALLTAHWQDDAALLNALAQLPDALR 180

Query: 185 AACACDWSDAVQALTPADRIMVVGRGIGFPLALEAALKCKETCAIQAEAFSGAEIKHGPM 244
           AACACDWSDAVQALTPADRIMVVGRGIGFPLALEAALKCKETCAIQAEAFSGAEIKHGP+
Sbjct: 181 AACACDWSDAVQALTPADRIMVVGRGIGFPLALEAALKCKETCAIQAEAFSGAEIKHGPI 240

Query: 245 ALIEEGYPLLMFAIRGPSQAGMLALAAEMRVRGAKVLLAAPEDVVERDLTLPVAATPDLD 304
           ALIEEGYPLLMFAIRGPSQAGMLALAAEMRVRGAKVLLAAPEDVVERDLTLPVAATPDLD
Sbjct: 241 ALIEEGYPLLMFAIRGPSQAGMLALAAEMRVRGAKVLLAAPEDVVERDLTLPVAATPDLD 300

Query: 305 PIVAIQAFYVMAAQLSAARGMDADRPRHLNKVTKTN 340
           PIVAIQAFYVMAAQLSAARGMDADRPRHLNKVTKTN
Sbjct: 301 PIVAIQAFYVMAAQLSAARGMDADRPRHLNKVTKTN 336


>gi|300313709|ref|YP_003777801.1| L-glutamine:D-fructose-6-phosphate
           aminotransferase [Herbaspirillum seropedicae SmR1]
          Length = 605

 Score =  108 bits (271), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 139/269 (51%), Gaps = 27/269 (10%)

Query: 89  ALAIAISQSGQSPDVVEPIRYFHAQGAA-TVALVNQADSPLASAAQWSLPLHAGVESSVA 147
           +L + ISQSG++ D +  +++  + G   T+ + N A S +    + +    AGVE  VA
Sbjct: 337 SLVVTISQSGETADTLAALKHARSLGMQHTLTICNVATSAMVRECELAYITRAGVEVGVA 396

Query: 148 ATKSFIASLA-----------ASALLTAHWQDDAALLNALAQLPDALHAACACDWSDAVQ 196
           +TK+F   LA              LLT   + +A  L A+  LP AL +  A + S    
Sbjct: 397 STKAFTTQLAALFLLTLALAQTRGLLTE--EQEAEHLKAMRHLPAALQSVLALEPSIVAW 454

Query: 197 ALTPADR--IMVVGRGIGFPLALEAALKCKETCAIQAEAFSGAEIKHGPMALIEEGYPLL 254
           A + A R   + +GRG+ +P+ALE ALK KE   I AEA++  E+KHGP+AL+ +  P++
Sbjct: 455 AESFARRENALFLGRGLHYPIALEGALKLKEITYIHAEAYAAGELKHGPLALVTDQMPVV 514

Query: 255 MFAIRGPSQAGMLALAA---EMRVRGAKVLLAAPEDV-VERDLTLPVAATPD----LDPI 306
             A   P+ A +  L +   E+R RG ++ + A  D  +     L V   P+    L PI
Sbjct: 515 TIA---PNDALVEKLKSNMQEVRARGGQLYVFADGDSHISSAEGLHVIRMPEHYGVLSPI 571

Query: 307 VAIQAFYVMAAQLSAARGMDADRPRHLNK 335
           + +    +++   + ARG D D+PR+L K
Sbjct: 572 LHVVPLQLLSYHTALARGTDVDKPRNLAK 600


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.130    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 888,414
Number of extensions: 33452
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 2
Length of query: 340
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 254
Effective length of database: 1,212,660
Effective search space: 308015640
Effective search space used: 308015640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)