BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0253.p (300 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313834|ref|YP_003777926.1| sugar ABC transporter permease ... 595 e-171 gi|300309612|ref|YP_003773704.1| sugar ABC transporter permease ... 146 2e-36 gi|300312637|ref|YP_003776729.1| sugar ABC transporter permease ... 101 7e-23 gi|300309783|ref|YP_003773875.1| sugar ABC transporter permease ... 96 2e-21 gi|300310303|ref|YP_003774395.1| sugar ABC transporter permease ... 84 2e-17 >gi|300313834|ref|YP_003777926.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 300 Score = 595 bits (1533), Expect = e-171, Method: Compositional matrix adjust. Identities = 299/300 (99%), Positives = 299/300 (99%) Query: 1 MLASSPLSTSSTSATIMRKPTLIQRSFGQAGHLWVHAVLCLYAVIALFPIALILINSVKT 60 MLASSPLSTSSTSATIMRKPTLIQRSFGQAGHLWVH VLCLYAVIALFPIALILINSVKT Sbjct: 1 MLASSPLSTSSTSATIMRKPTLIQRSFGQAGHLWVHTVLCLYAVIALFPIALILINSVKT 60 Query: 61 RNAIFEGPMALPTAETLTFAGFQKVLAGTHFLLYFGNSLAVTVAALFLIVLFGAMAAWAL 120 RNAIFEGPMALPTAETLTFAGFQKVLAGTHFLLYFGNSLAVTVAALFLIVLFGAMAAWAL Sbjct: 61 RNAIFEGPMALPTAETLTFAGFQKVLAGTHFLLYFGNSLAVTVAALFLIVLFGAMAAWAL 120 Query: 121 TEYRFFGNRALNFFIAIGIMIPIRLGTVSILQLVVALDLINTRTALVLVYTAQGLPLAVM 180 TEYRFFGNRALNFFIAIGIMIPIRLGTVSILQLVVALDLINTRTALVLVYTAQGLPLAVM Sbjct: 121 TEYRFFGNRALNFFIAIGIMIPIRLGTVSILQLVVALDLINTRTALVLVYTAQGLPLAVM 180 Query: 181 ILSEFMRQIPGELKDAARCDGVGELSIFFRVILPLLRPAIATVAVFTMIPAWNDLWFPLI 240 ILSEFMRQIPGELKDAARCDGVGELSIFFRVILPLLRPAIATVAVFTMIPAWNDLWFPLI Sbjct: 181 ILSEFMRQIPGELKDAARCDGVGELSIFFRVILPLLRPAIATVAVFTMIPAWNDLWFPLI 240 Query: 241 LAPGEDTRTVTLGVQQFIGQYATDWNSVLAALSMAVIPVLLLYMAFSRQLIRGLTSGAVK 300 LAPGEDTRTVTLGVQQFIGQYATDWNSVLAALSMAVIPVLLLYMAFSRQLIRGLTSGAVK Sbjct: 241 LAPGEDTRTVTLGVQQFIGQYATDWNSVLAALSMAVIPVLLLYMAFSRQLIRGLTSGAVK 300 >gi|300309612|ref|YP_003773704.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 283 Score = 146 bits (368), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 85/264 (32%), Positives = 142/264 (53%), Gaps = 14/264 (5%) Query: 44 VIALFPIALILINSVKTRNAIFEGPMALPTAETLTFAGFQKVLAGTHFLLYFGNSLAVTV 103 +I L P+ L+ S+++ + + G + +++ L + L YF NS +T+ Sbjct: 26 LIWLLPMLAALVTSIRSNDELMAGNYWGWPQDFAMLENYREALTASPMLHYFWNSCLITI 85 Query: 104 AALFLIVLFGAMAAWALTEYRFFGNR-------ALNFFIAIGIMIPIRLGTVSILQLVVA 156 ++ + AMA +AL+ Y+F GN A NF +MIP+R L ++ Sbjct: 86 PSVIGAISLAAMAGFALSTYQFRGNTVLFATFVACNFVPQQILMIPVR-------DLSLS 138 Query: 157 LDLINTRTALVLVYTAQGLPLAVMILSEFMRQIPGELKDAARCDGVGELSIFFRVILPLL 216 L L NT T ++L + A + L F++Q+P E+ +AAR +G E ++F+R++LPL+ Sbjct: 139 LGLFNTITGMMLFHIAMQTGFCTLFLRNFIKQLPFEMIEAARIEGASEWTVFYRIVLPLI 198 Query: 217 RPAIATVAVFTMIPAWNDLWFPLILAPGEDTRTVTLGVQQFIGQYATDWNSVLAALSMAV 276 RPA+A +AV WND ++ L+L G+D +T+GV GQ+ T WN V A +A Sbjct: 199 RPALAALAVLVFTFVWNDYFWALVLTQGDDVAPITVGVAALRGQWTTAWNLVSAGSILAA 258 Query: 277 IPVLLLYMAFSRQLIRGLTSGAVK 300 +P ++L+ +Q + GLT GA K Sbjct: 259 LPSVILFFVMQKQFVAGLTFGASK 282 >gi|300312637|ref|YP_003776729.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 101 bits (252), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 113/224 (50%), Gaps = 2/224 (0%) Query: 78 TFAGFQKVLAGTHFLLYFGNSLAVTVAALFLIVLFGAMAAWALTEYRFFGNRALNFFIAI 137 T A F+K+L T + + N++ V+V + F + AA+A+ RF G++ + I + Sbjct: 70 TLAHFKKLLFDTQYPAWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGSKQVGLGIFL 129 Query: 138 GIMIPIRLGTVSILQLVVALDLINTRTALVLVYTAQGLPLAVMILSEFMRQIPGELKDAA 197 +IP + + + +V L L +TR AL+L Y +P +L + R IP EL++ A Sbjct: 130 AYLIPPSILFIPLAAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIPYELEECA 189 Query: 198 RCDGVGELSIFFRVILPLLRPAIATVAVFTMIPAWNDLWFPLILAPGEDTRTVTLG-VQQ 256 DG I ++ILPL P + + +F +WN+ + L + +TV +G V + Sbjct: 190 LIDGATRWEILVKIILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVKTVPVGIVTE 249 Query: 257 FIGQYATDWNSVLAALSMAVIPVLLLYMAFSRQLIRGLTSGAVK 300 + W +++A + +PV ++Y F + G+T GAVK Sbjct: 250 LVEGDVYHWGALMAGALLGSLPVAVVYSFFVEYYVSGMT-GAVK 292 >gi|300309783|ref|YP_003773875.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 271 Score = 96.3 bits (238), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/280 (27%), Positives = 138/280 (49%), Gaps = 21/280 (7%) Query: 29 QAGHLWVHAVLCLYAVIALFPIALILINSVKTRNAIFEGPMA-LPTAETLTFAGFQKVLA 87 + LWV + A++ FPI + + + KT + + + LPT ET F++V + Sbjct: 5 KKSPLWVAVLGWACAIVLFFPIFWVAVTAFKTESQAYTPSLVFLPTLET-----FREVFS 59 Query: 88 GTHFLLYFGNSLAVTVAALFLIVLFGAMAAWAL-------TEYRFFGNRALNFFIAIGIM 140 +H+L Y NSL V++ + L +L AA+++ T+ + A+G++ Sbjct: 60 RSHYLGYVQNSLIVSLGSTLLSLLLAVPAAYSMAFFPTGRTQKLLLWMLSTKMMPAVGVL 119 Query: 141 IPIRLGTVSILQLVVALDLINTRTALVLVYTAQGLPLAVMILSEFMRQIPGELKDAARCD 200 IPI L + L++T T L ++YT LP+AV + + +P E+ +AAR D Sbjct: 120 IPIYL-------MAKNTGLLDTVTGLTIIYTLINLPIAVWMAFTYFNDVPKEILEAARID 172 Query: 201 GVGELSIFFRVILPLLRPAIATVAVFTMIPAWNDLWFPLILAPGEDTRTVTLGVQQFIGQ 260 G ++LP P +A+ A+ +I +WN+ ++ L L + +T+ + + Sbjct: 173 GANAWQEMIYLLLPTAMPGLASTALLLVILSWNEAFWSLNLT-SVNAAPLTVFIASYSNP 231 Query: 261 YATDWNSVLAALSMAVIPVLLLYMAFSRQLIRGLTSGAVK 300 W + AA +A+ P++ L +QL+RGLT GAVK Sbjct: 232 EGLFWAKLSAASLLAIAPIMALGWLAQKQLVRGLTFGAVK 271 >gi|300310303|ref|YP_003774395.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 272 Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/262 (24%), Positives = 113/262 (43%), Gaps = 3/262 (1%) Query: 38 VLCLYAVIALFPIALILINSVKTRNAIFEGPMALPTAETLTFAGFQKVLAGTHFLLYFGN 97 V+ LY L P+ +L S+KT P A TL ++ + + + N Sbjct: 14 VMLLYIAFTLVPLYWLLNTSLKTNEETLSVFTLWPNAPTLN--NYKTIFTDPSWYSGYIN 71 Query: 98 SLAVTVAALFLIVLFGAMAAWALTEYRFFGNRALNFFIAIGIMIPIRLGTVSILQLVVAL 157 S+ + +L AA+A + YRF G++ + F++ M P + + QL + Sbjct: 72 SIIYVAMNTVMSLLVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVFLLPFFQLYSTI 131 Query: 158 DLINTRTALVLVYTAQGLPLAVMILSEFMRQIPGELKDAARCDGVGELSIFFRVILPLLR 217 L +T A+ L + +PLAV IL FM +P E+ + A DG F R+ LPL++ Sbjct: 132 GLSDTHIAVALAHMLFNVPLAVWILEGFMSGVPREIDETAYIDGFSFPRFFLRIFLPLIK 191 Query: 218 PAIATVAVFTMIPAWNDLWFPLILAPGEDTRTVTLGVQQFIGQYATDWNSVLAALSMAVI 277 + A F + +W +L L + + ++ + + DW + AA + ++ Sbjct: 192 SGVGVTAFFCFMFSWVELLLARTLT-SVNAKPISAIMTRTASAAGMDWGILAAAGVLTIV 250 Query: 278 PVLLLYMAFSRQLIRGLTSGAV 299 P L+ + +G G V Sbjct: 251 PGALVIWFVRNHIAKGFAMGRV 272 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.330 0.141 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 833,239 Number of extensions: 33003 Number of successful extensions: 213 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 202 Number of HSP's successfully gapped: 13 Length of query: 300 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 215 Effective length of database: 1,217,395 Effective search space: 261739925 Effective search space used: 261739925 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)