BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0249.p
         (446 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313831|ref|YP_003777923.1| sugar ABC transporter periplasm...   906   0.0  
gi|300309614|ref|YP_003773706.1| sugar ABC transporter periplasm...    64   3e-11

>gi|300313831|ref|YP_003777923.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 446

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/446 (98%), Positives = 440/446 (98%)

Query: 1   MTRTKRPANTRTGPARCGLAAVCLCALTLWLGGLPAQAQSPSSAAAPVAATGSLQVLHWW 60
           MTRTKRPAN RTGPARCGLAAVCLCALTLWLGGLPAQAQSPSS   P  ATGSLQVLHWW
Sbjct: 1   MTRTKRPANARTGPARCGLAAVCLCALTLWLGGLPAQAQSPSSPVPPATATGSLQVLHWW 60

Query: 61  TSASERQAINVVVNQLARQDIQWRDVAIPGGAGMGAAKVLKSMVLANRAPEVTQLNGVVF 120
           TSASERQAINVVVNQLA+QDIQWRDVAIPGGAGMGAAKVLKSMVLANRAPEVTQLNGVVF
Sbjct: 61  TSASERQAINVVVNQLAKQDIQWRDVAIPGGAGMGAAKVLKSMVLANRAPEVTQLNGVVF 120

Query: 121 GEWADLGLLLELDNVAVQGNWEKQMFPTVWSLLNNHGHVVAAPLGIHRINSLYYNVAVFK 180
           GEWADLGLLLELDNVAVQGNWEKQMFPTVWSLLNNHGHVVAAPLGIHRINSLYYNVAVFK
Sbjct: 121 GEWADLGLLLELDNVAVQGNWEKQMFPTVWSLLNNHGHVVAAPLGIHRINSLYYNVAVFK 180

Query: 181 RYNLSPPKTWDEFDQIVKKLQGSGVVPLAQSAEAWQLATLFENLALAESGPAYYRKLFVE 240
           RYNLSPPKTWDEFDQIVKKLQGSGVVPLAQSAEAWQLATLFENLALAESGPAYYRKLFVE
Sbjct: 181 RYNLSPPKTWDEFDQIVKKLQGSGVVPLAQSAEAWQLATLFENLALAESGPAYYRKLFVE 240

Query: 241 MSPAAYLDARMLHILKRLRALAGAMAQPVRERPWTEVARSMVSGEAAMLIMGDWAKGELN 300
           MSPAAYLDARMLHILKRLRALAGAMAQPVRERPWTEVARSMVSGEAAMLIMGDWAKGELN
Sbjct: 241 MSPAAYLDARMLHILKRLRALAGAMAQPVRERPWTEVARSMVSGEAAMLIMGDWAKGELN 300

Query: 301 AWGMEVDQQFGCAPAPGTGDYHLYSTDTLAMFAGNYAHQPMQETLARLTMSPAVQSEYNR 360
           AWGMEVDQQFGCAPAPGTG+YHLYSTDTLAMFAGNYAHQPMQETLARLTMSPAVQSEYNR
Sbjct: 301 AWGMEVDQQFGCAPAPGTGEYHLYSTDTLAMFAGNYAHQPMQETLARLTMSPAVQSEYNR 360

Query: 361 IKGSIPVLRAADPHMDRCARDSWRTFSKGPMWQAPSLVHRMATDDTTKDAIVAEVQRFFM 420
           IKGSIPVLRAADPHMDRCARDSWRTFSKGPMWQAPSLVHRMATDDTTKDAIVAEVQRFFM
Sbjct: 361 IKGSIPVLRAADPHMDRCARDSWRTFSKGPMWQAPSLVHRMATDDTTKDAIVAEVQRFFM 420

Query: 421 DRSISEEQAQKRLATIARTLSRNRND 446
           DRSISEEQAQKRLATIARTLSRNRND
Sbjct: 421 DRSISEEQAQKRLATIARTLSRNRND 446


>gi|300309614|ref|YP_003773706.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 102/210 (48%), Gaps = 32/210 (15%)

Query: 105 LANRAPEVTQL-NGVVFGEWADLGLLLELDNVAVQGNWEKQMFPTVWSLLNN----HGHV 159
           L+ +AP++    NG     +A  GLL +     V  +W+K  +   ++        HG  
Sbjct: 78  LSTQAPDIINWHNGERMAFYASRGLLED-----VSEDWKKNGWDATYASTKEASSWHGKQ 132

Query: 160 VAAPLGIHRINSLYYNVAVFKRYNLS-PPKTWDEFDQIVKKLQGSGVVPLAQSA-EAWQL 217
            + P  ++    ++Y   +FK+  ++  PKTWDEF    KKL+ +G+ P+A    +AW L
Sbjct: 133 YSVPT-VYYSWGMFYRKDLFKKVGIAGEPKTWDEFLDACKKLKAAGIAPIAVGGRDAWTL 191

Query: 218 ATLFENLALAESGPAYYRKLFVEMSPAAYLDARMLHILKRLRALAGAMAQPVRERPWTEV 277
           A  F+ L L  +G A++++L       AY DAR+  +    ++L       +  + + + 
Sbjct: 192 AGWFDYLDLRINGNAFHQQLMA--GDIAYTDARVKKVHTAWKSL-------IDNKYFIDN 242

Query: 278 ARS---------MVSGEAAMLIMGDW-AKG 297
           A S         +  G+AAM++MG + AKG
Sbjct: 243 ALSYDLDGAQPFLFQGKAAMMLMGTFIAKG 272


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,400,145
Number of extensions: 56866
Number of successful extensions: 180
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 2
Length of query: 446
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 358
Effective length of database: 1,203,190
Effective search space: 430742020
Effective search space used: 430742020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)