BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0243.p (598 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis tra... 1199 0.0 gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 525 e-150 gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis tra... 472 e-134 gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis tra... 454 e-128 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 332 5e-92 >gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 1199 bits (3101), Expect = 0.0, Method: Compositional matrix adjust. Identities = 598/598 (100%), Positives = 598/598 (100%) Query: 1 MFNSIKARILFYTITLLIASLAVVGTVSFFIIKLDNDRAIERNAESVASGFGSTINEWVA 60 MFNSIKARILFYTITLLIASLAVVGTVSFFIIKLDNDRAIERNAESVASGFGSTINEWVA Sbjct: 1 MFNSIKARILFYTITLLIASLAVVGTVSFFIIKLDNDRAIERNAESVASGFGSTINEWVA 60 Query: 61 ARTAMTVAAADGVLNADPVFVIKTLQKSGGFYVTTLGKEDKTAFTSAAEGLPAGYDPTAR 120 ARTAMTVAAADGVLNADPVFVIKTLQKSGGFYVTTLGKEDKTAFTSAAEGLPAGYDPTAR Sbjct: 61 ARTAMTVAAADGVLNADPVFVIKTLQKSGGFYVTTLGKEDKTAFTSAAEGLPAGYDPTAR 120 Query: 121 PWYKQAVAAGKPVLTKPYTDVATKKPMVSFTAPVMQNGQRAGVVAAAMFLDGVSDVVRSI 180 PWYKQAVAAGKPVLTKPYTDVATKKPMVSFTAPVMQNGQRAGVVAAAMFLDGVSDVVRSI Sbjct: 121 PWYKQAVAAGKPVLTKPYTDVATKKPMVSFTAPVMQNGQRAGVVAAAMFLDGVSDVVRSI 180 Query: 181 HPTPASFAFLVDRDGLMLAHPDGQWVNKPAKEWNAELTPERLNALAADDKASEVMLEGAA 240 HPTPASFAFLVDRDGLMLAHPDGQWVNKPAKEWNAELTPERLNALAADDKASEVMLEGAA Sbjct: 181 HPTPASFAFLVDRDGLMLAHPDGQWVNKPAKEWNAELTPERLNALAADDKASEVMLEGAA 240 Query: 241 KLVKGVPIKGTEWTLMLAMDKADVTAGLRNASRSALIALVLVALVAAGIMSLITTAVFQR 300 KLVKGVPIKGTEWTLMLAMDKADVTAGLRNASRSALIALVLVALVAAGIMSLITTAVFQR Sbjct: 241 KLVKGVPIKGTEWTLMLAMDKADVTAGLRNASRSALIALVLVALVAAGIMSLITTAVFQR 300 Query: 301 LSRVRRAMDNLSSGNGDLTLRLTEDGSDEVTQISRSFNTFVNQITGILQDVRRSSDTVKI 360 LSRVRRAMDNLSSGNGDLTLRLTEDGSDEVTQISRSFNTFVNQITGILQDVRRSSDTVKI Sbjct: 301 LSRVRRAMDNLSSGNGDLTLRLTEDGSDEVTQISRSFNTFVNQITGILQDVRRSSDTVKI 360 Query: 361 SSTEIATGNQDLSARTEQQAGALEETASAMEELTSTVQQNSENARRANELAGNASKIAAQ 420 SSTEIATGNQDLSARTEQQAGALEETASAMEELTSTVQQNSENARRANELAGNASKIAAQ Sbjct: 361 SSTEIATGNQDLSARTEQQAGALEETASAMEELTSTVQQNSENARRANELAGNASKIAAQ 420 Query: 421 GGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 480 GGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV Sbjct: 421 GGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 480 Query: 481 ASEVRSLAQRSAQAAKEIKVLIDSSVSKVADGGVLVTQAGQTMEQIVASIRDVSVIVSEI 540 ASEVRSLAQRSAQAAKEIKVLIDSSVSKVADGGVLVTQAGQTMEQIVASIRDVSVIVSEI Sbjct: 481 ASEVRSLAQRSAQAAKEIKVLIDSSVSKVADGGVLVTQAGQTMEQIVASIRDVSVIVSEI 540 Query: 541 AHASAEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAARSLQDEAHRLSVLVGGFKM 598 AHASAEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAARSLQDEAHRLSVLVGGFKM Sbjct: 541 AHASAEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAARSLQDEAHRLSVLVGGFKM 598 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 525 bits (1352), Expect = e-150, Method: Compositional matrix adjust. Identities = 301/599 (50%), Positives = 411/599 (68%), Gaps = 7/599 (1%) Query: 1 MFNSIKARILFYTITLLIASLAVVGTVSFFIIKLDNDRAIERNAESVASGFGSTINEWVA 60 M +S++AR++F + ++ ++ ++ + F ++ D AI + + + I+EWV Sbjct: 1 MLSSLRARLIFICVLIVALAMIILSAANIFTVRSDTLEAISSQTQQLTESHAANISEWVR 60 Query: 61 ARTAMTVAAADGVLNADPVFVIKTLQKSGGFYVTTLGKEDKTAFTSAAEGLPAGYDPTAR 120 ++ +T A + +D + ++ Q++G F +G DK A +PAGYDPTAR Sbjct: 61 SKRVVTGAMKQALKQSDVLPIVAAAQEAGSFDDAYIGYPDKRML--ALHPMPAGYDPTAR 118 Query: 121 PWYKQAVAAGKPVLTKPYTDVATKKPMVSFTAPVMQNGQRAGVVAAAMFLDGVSDVVRSI 180 PWYKQAV AGKPVLT PY D T K +V+F PV V+ + + LD V V I Sbjct: 119 PWYKQAVEAGKPVLTAPYVDATTGKLVVTFAEPVGDKSNLQAVLGSDVQLDNVVRTVAGI 178 Query: 181 HPTPASFAFLVDRDGLMLAHPDGQWVNKPAKEWNAELTPERLNALAADDKASEVMLEGAA 240 PTP+SFAF+V +DG+++ HP+ + KP + L+ + +LA + + G Sbjct: 179 KPTPSSFAFIVGKDGVIITHPNKELALKPVSSLDQTLSAQ---SLAGMKQGGSATIGGIR 235 Query: 241 KLVKGVPIKGTEWTLMLAMDKADVTAGLRNASRSALIALVLVALVAAGIM-SLITTAVFQ 299 L+ PI T+W+L++A+D + T + A + L ++A+VA+ I+ S T + + Sbjct: 236 YLLFTQPIANTDWSLVVALDYREATHAI-GALMTLSTVLAVLAIVASAILLSYTITRLLR 294 Query: 300 RLSRVRRAMDNLSSGNGDLTLRLTEDGSDEVTQISRSFNTFVNQITGILQDVRRSSDTVK 359 RL VR AM+ ++SG+GDLT RL G DE+ QISR+FN F ++I+ L D+RR+S++VK Sbjct: 295 RLGVVRNAMEEIASGDGDLTRRLDTSGKDELAQISRAFNHFADKISRTLLDIRRASESVK 354 Query: 360 ISSTEIATGNQDLSARTEQQAGALEETASAMEELTSTVQQNSENARRANELAGNASKIAA 419 +SS+EIA+GN DLSARTEQQAG+LEETASAMEELTSTV+QN++NAR+AN+LA +AS +A Sbjct: 355 VSSSEIASGNMDLSARTEQQAGSLEETASAMEELTSTVKQNADNARQANQLAVSASDVAV 414 Query: 420 QGGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAV 479 GG+VVG VV+TM +IN SSR+I DII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAV Sbjct: 415 HGGQVVGQVVATMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAV 474 Query: 480 VASEVRSLAQRSAQAAKEIKVLIDSSVSKVADGGVLVTQAGQTMEQIVASIRDVSVIVSE 539 VASEVRSLAQRSA AAKEIK LID SV KV G LV QAG TME++V+S+R V+ IV E Sbjct: 475 VASEVRSLAQRSATAAKEIKGLIDDSVQKVETGSQLVAQAGSTMEEVVSSVRRVTDIVGE 534 Query: 540 IAHASAEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAARSLQDEAHRLSVLVGGFKM 598 I+ AS EQ+ GI EV A+ +DE TQQNAALVEQAAAAA+SLQ++A L+ +V GFK+ Sbjct: 535 ISAASQEQSSGITEVGNAVNQMDEATQQNAALVEQAAAAAKSLQEQAAHLAAVVAGFKL 593 >gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 625 Score = 472 bits (1214), Expect = e-134, Method: Compositional matrix adjust. Identities = 269/596 (45%), Positives = 389/596 (65%), Gaps = 1/596 (0%) Query: 4 SIKARILFYTITLLIASLAVVGTVSFFIIKLDNDRAIERNAESVASGFGSTINEWVAART 63 S++ R++ +++ ++ + +F + ++ +A + I EW ++ Sbjct: 24 SLRTRLIALCAGIVVLAMLAIVLTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWSDSKK 83 Query: 64 AMTVAAADGVLNADPVFVIKTLQKSGGFYVTTLGKEDKTAFTSAAEGLPAGYDPTARPWY 123 + + + ADP+ +K Q +GGF + LG DK A S YDPT RPWY Sbjct: 84 LVVTSIKEAADAADPLPFVKAAQTAGGFDLAYLGYADKHAVFSQQRSRAPDYDPTKRPWY 143 Query: 124 KQAVAAGKPVLTKPYTDVATKKPMVSFTAPVMQNGQRAGVVAAAMFLDGVSDVVRSIHPT 183 +QA +PVLT PYT +T K +V+F V ++GQ A V AA + LD V V +I PT Sbjct: 144 QQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVVAIKPT 203 Query: 184 PASFAFLVDRDGLMLAHPDGQWVNKPAKEWNAELTPERLNALAADDKASEVMLEGAAKLV 243 P S+AFL D G ++AHP+ + KP + +A +TP+ L+ +V L+G +++ Sbjct: 204 PNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVHQDVALDGRRQML 263 Query: 244 KGVPIKGTEWTLMLAMDKADVTAGLRNASRSALIALVLVALVAAGIMSLITTAVFQRLSR 303 + GT+W L++A+D+AD A L S+ + VLV ++AA ++ + + + RL+ Sbjct: 264 FVARVGGTDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRLLGRLTV 323 Query: 304 VRRAMDNLSSGNGDLTLRLTEDG-SDEVTQISRSFNTFVNQITGILQDVRRSSDTVKISS 362 V+ A++ ++ G+GDLT RL G SDE+ +I +FN FV++I ++ D+R +S T+ +S Sbjct: 324 VQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTIHAAS 383 Query: 363 TEIATGNQDLSARTEQQAGALEETASAMEELTSTVQQNSENARRANELAGNASKIAAQGG 422 +IA+GN DLS RTE QA +LE+TA+AME+LTS+V+ N++NA +AN+L+ +AS+IA QGG Sbjct: 384 RDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIATQGG 443 Query: 423 EVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS 482 +V VV TM INASS++I DII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS Sbjct: 444 TMVEQVVQTMNGINASSQKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS 503 Query: 483 EVRSLAQRSAQAAKEIKVLIDSSVSKVADGGVLVTQAGQTMEQIVASIRDVSVIVSEIAH 542 EVRSLAQRSA AAKEIKVLI SV +V G V QAG T+ +V S++ VS +V+EI Sbjct: 504 EVRSLAQRSATAAKEIKVLITDSVGQVQAGEDTVAQAGATIRSVVDSVQKVSDVVAEITA 563 Query: 543 ASAEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAARSLQDEAHRLSVLVGGFKM 598 AS EQ+ GI + N A+ H+D+ TQQNAALVEQAAA A+SLQ++A RL+ +V F++ Sbjct: 564 ASREQSQGINQANDAVAHMDQTTQQNAALVEQAAAGAQSLQEQAERLAGIVALFRL 619 >gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 454 bits (1167), Expect = e-128, Method: Compositional matrix adjust. Identities = 252/598 (42%), Positives = 385/598 (64%), Gaps = 2/598 (0%) Query: 1 MFNSIKARILFYTITLLIASLAVVGTVSFFIIKLDNDRAIERNAESVASGFGSTINEWVA 60 M +S++AR++ I L+I+S+ + ++ I + + A + + + + I +W+A Sbjct: 1 MLSSLRARVICALILLVISSVLISTAANYLIARKGLNAATDDDLATAVDQHAAVIGDWLA 60 Query: 61 ARTAMTVAAADGVLNADPVFVIKTLQKSGGFYVTTLGKEDKTAFTSAAEGLPAGYDPTAR 120 ++ M + D L +DP ++K +Q +GGFY +G DK A + +PA YDPT R Sbjct: 61 GKSKMIASLEDISLTSDPDAMLKQIQVAGGFYDVGVGYPDKRAKFTDWPNIPATYDPTTR 120 Query: 121 PWYKQAVAAGKPVLTKPYTDVATKKPMVSFTAPVMQNGQRAGVVAAAMFLDGVSDVVRSI 180 PWYK + AGKPV PY + +V+ PVM++G VV + LD V + ++SI Sbjct: 121 PWYKGVLQAGKPV-ALPYVST-SGLLLVALARPVMRDGVLKAVVVGDVALDSVVENIKSI 178 Query: 181 HPTPASFAFLVDRDGLMLAHPDGQWVNKPAKEWNAELTPERLNALAADDKASEVMLEGAA 240 HPTP+SF LV++ G ++AHPD Q K A E E + + ++++G Sbjct: 179 HPTPSSFGMLVEQGGRIIAHPDAQLRFKQASELAPEFSDLNVANAGPGQPPVHIVVDGRE 238 Query: 241 KLVKGVPIKGTEWTLMLAMDKADVTAGLRNASRSALIALVLVALVAAGIMSLITTAVFQR 300 KLV+ + GT+W +++A+D+ + +AG+R S+L++LV V + A+ I + +T F+R Sbjct: 239 KLVRVQAVPGTDWNIVVAIDQQEASAGVRALLASSLLSLVAVVIAASLIGAAVTATAFRR 298 Query: 301 LSRVRRAMDNLSSGNGDLTLRLTEDGSDEVTQISRSFNTFVNQITGILQDVRRSSDTVKI 360 L ++ AM + SG+GDLT RL + G DEV I++SFN FV ++ +++D+R + +TV++ Sbjct: 299 LGQISAAMTAIGSGSGDLTQRLPDHGRDEVAIIAQSFNAFVAKLQSVMRDIRDAGETVRV 358 Query: 361 SSTEIATGNQDLSARTEQQAGALEETASAMEELTSTVQQNSENARRANELAGNASKIAAQ 420 +S EIA N DLS RTE A +LE+TA++M E+++TV +++ A A++ + A+ IA+Q Sbjct: 359 ASDEIAAANHDLSVRTESAAASLEQTAASMAEISATVDRSATAAHEADQRSSAATGIASQ 418 Query: 421 GGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 480 GG+VV + V+TM I S QI DII+VIDGIAFQTNILALNAAVE+ARAGEQGRGFAVV Sbjct: 419 GGKVVSDAVATMGEIEKVSAQIGDIISVIDGIAFQTNILALNAAVESARAGEQGRGFAVV 478 Query: 481 ASEVRSLAQRSAQAAKEIKVLIDSSVSKVADGGVLVTQAGQTMEQIVASIRDVSVIVSEI 540 A EVR+LAQRSA AA+E+K L+++++S+VA G V QAG TM IV DV +++I Sbjct: 479 AHEVRNLAQRSAGAAREVKDLVEATISRVAAGSQQVRQAGGTMRDIVTHTDDVQSAIADI 538 Query: 541 AHASAEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAARSLQDEAHRLSVLVGGFKM 598 A + EQ GIQEVN A+ +D QQNAALVE++AAA+ +LQ +A+ L+ + F++ Sbjct: 539 ARTTTEQTRGIQEVNQAVIQLDGMVQQNAALVEESAAASSTLQQQANVLAATIARFRI 596 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 332 bits (851), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 202/327 (61%), Positives = 243/327 (74%), Gaps = 14/327 (4%) Query: 274 SALIALVLVALVAAGIMSLITTAV--FQRLSRVRRAMDNLSSGNGDLTLRLTEDGSDEVT 331 + LIA +L LVA + + AV QR++R GDLTLR+ G DE Sbjct: 200 TVLIASLLAFLVATNVSRPLKEAVQIAQRVAR------------GDLTLRIRPAGRDETG 247 Query: 332 QISRSFNTFVNQITGILQDVRRSSDTVKISSTEIATGNQDLSARTEQQAGALEETASAME 391 + + + I+ +VR+ +DT+ +S EIA GN DLS RTEQQAG+LEETASAME Sbjct: 248 ALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSLEETASAME 307 Query: 392 ELTSTVQQNSENARRANELAGNASKIAAQGGEVVGNVVSTMEAINASSRQIADIITVIDG 451 ELTSTV QN++NAR+AN+LA AS IA+QGGEVVG VV TME I SSR+IADII+VIDG Sbjct: 308 ELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIADIISVIDG 367 Query: 452 IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIDSSVSKVAD 511 IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LID SV KV+ Sbjct: 368 IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDDSVQKVSA 427 Query: 512 GGVLVTQAGQTMEQIVASIRDVSVIVSEIAHASAEQNGGIQEVNLAITHIDEGTQQNAAL 571 G LV +AG TM ++VAS+R V+ +V+EI+ A+ EQ+GGI EVNLAIT +DE TQQNAAL Sbjct: 428 GSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDETTQQNAAL 487 Query: 572 VEQAAAAARSLQDEAHRLSVLVGGFKM 598 VEQAAAAA SL+ +A L+ +VG FK+ Sbjct: 488 VEQAAAAADSLKGQASNLAAVVGKFKL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.127 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,463,732 Number of extensions: 55365 Number of successful extensions: 604 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 352 Number of HSP's successfully gapped: 71 Length of query: 598 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 507 Effective length of database: 1,188,985 Effective search space: 602815395 Effective search space used: 602815395 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)