BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0242.p (228 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313824|ref|YP_003777916.1| GntR family transcription regul... 454 e-129 gi|300313534|ref|YP_003777626.1| GntR family transcription regul... 130 9e-32 gi|300313540|ref|YP_003777632.1| transcription regulator protein... 108 3e-25 gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 69 4e-13 gi|300311599|ref|YP_003775691.1| transcription regulator protein... 60 2e-10 >gi|300313824|ref|YP_003777916.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 228 Score = 454 bits (1169), Expect = e-129, Method: Compositional matrix adjust. Identities = 227/228 (99%), Positives = 228/228 (100%) Query: 1 MTDSAPAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDK 60 MTDSAPAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDK Sbjct: 1 MTDSAPAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDK 60 Query: 61 LVDLIPDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQA 120 LVDLIPDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQA Sbjct: 61 LVDLIPDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQA 120 Query: 121 VSDDNMQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEH 180 VSDDNMQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEH Sbjct: 121 VSDDNMQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEH 180 Query: 181 RAFIAAARAGDTERAIELMEHHLLHVEQALAFEPKAGPRKDLLRELLS 228 RAFIAAARAGDTERA+ELMEHHLLHVEQALAFEPKAGPRKDLLRELLS Sbjct: 181 RAFIAAARAGDTERAMELMEHHLLHVEQALAFEPKAGPRKDLLRELLS 228 >gi|300313534|ref|YP_003777626.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 130 bits (327), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 77/206 (37%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 6 PAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLI 65 P+ SS IA I I A++L PG +L E+ LA +++VSRT++R AL L +V + Sbjct: 5 PSLKSSSQIAVRITEAILAKQLAPGTRLGEQQLADLFKVSRTQVREALTHLMARGIVTVS 64 Query: 66 PDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPED-YARLEAHLELERQAVSDD 124 +G FV +PT + R F RR +E ++R+ R + +L H+ E A++ Sbjct: 65 ARRGWFVIEPTPAQAREAFEARRVIELGLLRQARLRPVGDTAIGQLREHIAREEAAIAGA 124 Query: 125 NMQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFI 184 ++ RS LL DFH+ LA +GN +L + L L R+ L ML+QS+ A S EH + Sbjct: 125 DVGARSYLLGDFHVCLAECLGNSLLAETLRDLTARTTLTAMLHQSSEQAEDSCSEHVLIV 184 Query: 185 AAARAGDTERAIELMEHHLLHVEQAL 210 A GD E+A +LM HL HVE L Sbjct: 185 EALERGDLEQAEQLMHDHLQHVESGL 210 >gi|300313540|ref|YP_003777632.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 108 bits (271), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 104/205 (50%), Gaps = 6/205 (2%) Query: 5 APAPDSSDAIA------SDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAK 58 APA + +A+A DI I RLPP KL E+ L ++Y +R +R L LA Sbjct: 16 APARERDNAVAVEERMYQDIYDAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKVLARLAA 75 Query: 59 DKLVDLIPDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELER 118 + +VDL ++GAF++ P+ E R++F +R LE A++ + A A L +E ER Sbjct: 76 EGMVDLEANRGAFIASPSPAEVRDMFELRNILEHAVLEKLGHTAGTRQIAGLRRMVEEER 135 Query: 119 QAVSDDNMQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSE 178 + + L + FH+ LA + GN +L + L KL R+ L+ ++ ACS + Sbjct: 136 DCYLNGDRPRWIRLSAQFHLALAELTGNALLVETLRKLVSRTTLMIAKTEAPGHNACSFD 195 Query: 179 EHRAFIAAARAGDTERAIELMEHHL 203 EH + A GD + A M HHL Sbjct: 196 EHETVLEALEKGDIKAAQAHMAHHL 220 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 68.6 bits (166), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 1/195 (0%) Query: 11 SDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIPDKGA 70 ++A+ I IA +L PG L E +LA + VSRT IR AL+ LA +V++ P +GA Sbjct: 8 AEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMRPRRGA 67 Query: 71 FVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDDNMQVRS 130 V++ ++ +F V E+ R R TP ++A L A + + A ++ Sbjct: 68 IVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDANDPDAYF 127 Query: 131 TLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSS-EEHRAFIAAARA 189 L FH + N L D L R L RD SS +EH+A + A + Sbjct: 128 YLNEAFHDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDRLKSSFDEHQAVVDAIIS 187 Query: 190 GDTERAIELMEHHLL 204 GD E+ ++L+ H++ Sbjct: 188 GDAEKTVDLLREHIM 202 >gi|300311599|ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 92/200 (46%), Gaps = 10/200 (5%) Query: 11 SDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIPDKGA 70 S+ + I + I + PG+K+ E LAR Y +SR +R A+ L L+ +P GA Sbjct: 18 SEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHVGA 77 Query: 71 FVSKPTVEETRNIFFVRRTLESAMVR---EFVARATPEDYAR-LEAHLELERQAVSDDNM 126 V T+E +F +R +LE R + ++RA ++ R L+ H + E Sbjct: 78 RVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLDTHEKDEAFQAGRGYY 137 Query: 127 QVRSTLLSDFHILLARIVGNDVLTDIL-EKLAGRSALITMLYQST--RDAACSSEEHRAF 183 Q DFH + + GN +LT IL +L + + + Y +T R +E HR Sbjct: 138 QQEGDY--DFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPHRPRQAFAEHHRIL 195 Query: 184 IAAARAGDTERAIELMEHHL 203 A A GD E A LM H+ Sbjct: 196 DALA-DGDGELADLLMRRHI 214 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.131 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 574,888 Number of extensions: 20528 Number of successful extensions: 128 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 122 Number of HSP's successfully gapped: 10 Length of query: 228 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 146 Effective length of database: 1,231,600 Effective search space: 179813600 Effective search space used: 179813600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)