BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0238.p (594 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 847 0.0 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 554 e-159 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 398 e-112 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 390 e-109 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 379 e-106 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/426 (99%), Positives = 425/426 (99%) Query: 1 MKLKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRD 60 MKLKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRD Sbjct: 1 MKLKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRD 60 Query: 61 NVNGAARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQE 120 NVNGAARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQE Sbjct: 61 NVNGAARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQE 120 Query: 121 ARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVAE 180 ARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSV E Sbjct: 121 ARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVTE 180 Query: 181 GRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVATAVAAGDLTVQIGAT 240 GRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVA+AVAAGDLTVQIGAT Sbjct: 181 GRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQIGAT 240 Query: 241 SKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALEE 300 SKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALEE Sbjct: 241 SKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALEE 300 Query: 301 TASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDI 360 TASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDI Sbjct: 301 TASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDI 360 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDS 420 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDS Sbjct: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDS 420 Query: 421 VSRVDN 426 VSRVDN Sbjct: 421 VSRVDN 426 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 554 bits (1427), Expect = e-159, Method: Compositional matrix adjust. Identities = 294/428 (68%), Positives = 350/428 (81%) Query: 1 MKLKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRD 60 MK+ D+KISVRL CFA LI VMC+I GVG+K+L +S ++ IV DRY K+AL +I D Sbjct: 2 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 61 Query: 61 NVNGAARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQE 120 VN AR+LRNA++ RN EE +YLDR +++ +E L +MEK +T RG EL ++++ Sbjct: 62 KVNTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQ 121 Query: 121 ARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVAE 180 AR+ Y+ R K+ +LI QQK++EA LF + IP QDKYF + + V+FQ SLM++S Sbjct: 122 ARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAER 181 Query: 181 GRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVATAVAAGDLTVQIGAT 240 + SAI +ML LS VA+ L + A L+TRSITRPLNEAV VATAVAAGDLTVQI AT Sbjct: 182 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEAT 241 Query: 241 SKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALEE 300 SKDETGALL ALKSMND+LHRIV+EVR G+DTINTAS EIATGNLDLSSRTE+QAGALEE Sbjct: 242 SKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEE 301 Query: 301 TASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDI 360 TASAMEELTSTV+QNADNARQAN+LA TAS+VA+QGGSVVG+VVQTMG+INDASRKIVDI Sbjct: 302 TASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDI 361 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDS 420 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA+AAKEIK+LID S Sbjct: 362 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDAS 421 Query: 421 VSRVDNAA 428 V RV++ + Sbjct: 422 VERVESGS 429 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 398 bits (1022), Expect = e-112, Method: Compositional matrix adjust. Identities = 219/424 (51%), Positives = 293/424 (69%) Query: 1 MKLKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRD 60 M+ ++ I+ RLA+ F++LI V+ I +G+ L+ I+K+ L+V DRY+KIA+ I Sbjct: 1 MRFNNLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISG 60 Query: 61 NVNGAARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQE 120 V+ A +LRN LL + + + SA+ T+ ++ ++++ + + E Sbjct: 61 KVDDVAISLRNQLLMTDPAQIAAEQKTIESLSAENTKLYDELTRLVANPEAKAKLDKVTE 120 Query: 121 ARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVAE 180 R +Y R ++ +L K+ A++L+ ++++P Q YF LD+ Q+ LM+QSV + Sbjct: 121 TRKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMDQSVDQ 180 Query: 181 GRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVATAVAAGDLTVQIGAT 240 ++ +M+ +A AW ++RSITRPL+ AV VA VAAGDLT I A Sbjct: 181 AEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIAAH 240 Query: 241 SKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALEE 300 S DETG LL AL +MN L IV EVR+G+D++ TAS +IATGNLDLSSRTEEQA ALEE Sbjct: 241 SNDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALEE 300 Query: 301 TASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDI 360 TAS++EELTS+VKQNAD+ R+++ LAA AS+VA QGG V QVVQTMG IND+S KIVDI Sbjct: 301 TASSLEELTSSVKQNADHTRKSSELAANASQVANQGGLAVKQVVQTMGAINDSSHKIVDI 360 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDS 420 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIK LI+DS Sbjct: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDS 420 Query: 421 VSRV 424 V++V Sbjct: 421 VNQV 424 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 390 bits (1002), Expect = e-109, Method: Compositional matrix adjust. Identities = 227/432 (52%), Positives = 298/432 (68%), Gaps = 12/432 (2%) Query: 3 LKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRDNV 62 +K++KI VRLA+ F L+ +M ++ +G+ L SI ++ D +IAL E RD V Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDAT-----DDMTRIALKKE-RDAV 54 Query: 63 NGAARNLRN-----ALLGRNLEEATRYLDRSA-ANSAKTTEALGKMEKILSTARGRELFQ 116 A N A++ + + Y + A SA+ ++ ++E ++ A + LF Sbjct: 55 QWHAAIKENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFD 114 Query: 117 SIQEARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQ 176 + + R+AY R + ++ A E+ T ++ D Y + ++ FQK +++Q Sbjct: 115 EVGKLRAAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQ 174 Query: 177 SVAEGRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVATAVAAGDLTVQ 236 + A +S +M+L L A+ I L AWL+TRSITRPLN+AV++A VAAGDLT + Sbjct: 175 TAAAINRDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSR 234 Query: 237 IGATSKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAG 296 I ++S+DETG LLAALK+MN +L IV VR G++TINTAS EIATGNLDLS+RTE QAG Sbjct: 235 IDSSSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAG 294 Query: 297 ALEETASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRK 356 +LEETASAME+LTSTVKQNADNARQAN LAA+AS+VA QGG+VV QVV TMG I+ +S+K Sbjct: 295 SLEETASAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQK 354 Query: 357 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKAL 416 I DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSASAAKEIK L Sbjct: 355 IADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQL 414 Query: 417 IDDSVSRVDNAA 428 IDDSV +VD+ + Sbjct: 415 IDDSVEKVDDGS 426 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 379 bits (974), Expect = e-106, Method: Compositional matrix adjust. Identities = 214/432 (49%), Positives = 293/432 (67%), Gaps = 7/432 (1%) Query: 3 LKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRDNV 62 K++K++VRLA FA ++ ++ +++ +++I+++ IV DRY K+ A ++RD V Sbjct: 5 FKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGV 64 Query: 63 NGAARNLRNALLGRNLEE----ATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSI 118 N + LR + ++E R+ A +T EAL K+ TA G++ +++ Sbjct: 65 NEQIKYLRG--IAIDIENRPANEKRFAQLEVA-VKQTKEALDKITARQVTAVGQKKAKAL 121 Query: 119 QEARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSV 178 EAR A++ + L+K A E + ++ Q+ Y + F Q + ++ Sbjct: 122 DEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAEG 181 Query: 179 AEGRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVATAVAAGDLTVQIG 238 A+ AI + L S A+ +I +L+ RSI +PL EAV VA VAAGDLT +I Sbjct: 182 AKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIE 241 Query: 239 ATSKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGAL 298 S+DETG L+ AL+ MND+L IVS VR+G+++I TAS EIA+GNLDLS+RTE+QAG+L Sbjct: 242 PHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSL 301 Query: 299 EETASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIV 358 EETASAMEE+TSTV+QNADNARQAN +A +ASE+A+QGG +VG+VV TM EIN +SRKIV Sbjct: 302 EETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIV 361 Query: 359 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALID 418 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIKALI Sbjct: 362 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIA 421 Query: 419 DSVSRVDNAAAW 430 DSV +V+ +A Sbjct: 422 DSVGKVEGGSAL 433 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.129 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,029,372 Number of extensions: 31056 Number of successful extensions: 461 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 372 Number of HSP's successfully gapped: 71 Length of query: 594 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 503 Effective length of database: 1,188,985 Effective search space: 598059455 Effective search space used: 598059455 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)