BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0237.p (485 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313819|ref|YP_003777911.1| two component sensor histidine ... 964 0.0 gi|300314014|ref|YP_003778106.1| two component sensor histidine ... 287 2e-78 gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase tra... 255 5e-69 gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 243 3e-65 gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 211 2e-55 >gi|300313819|ref|YP_003777911.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 485 Score = 964 bits (2492), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/485 (99%), Positives = 484/485 (99%) Query: 1 MAGTPRRLGSLRSQLVRWLLIPLTLLVAVDAVSVYYNALEVADLAYDRSLLASTRALAER 60 MAGTPRRLGSLRSQLVRWLLIPLTLLVAVDAVSVYYNALEVADLAYDRSLLASTRALAER Sbjct: 1 MAGTPRRLGSLRSQLVRWLLIPLTLLVAVDAVSVYYNALEVADLAYDRSLLASTRALAER 60 Query: 61 VSVVDGHVTADVPYVALDSFETDNLGRIYYKVTGLNGELVSGYDDLPPVPPDVKRSEVYP 120 VSVVDGHVTADVPYVALDSFETDNLGRIYYKVTGLNGELVSGYDDLPPVPPDVKRSEVYP Sbjct: 61 VSVVDGHVTADVPYVALDSFETDNLGRIYYKVTGLNGELVSGYDDLPPVPPDVKRSEVYP 120 Query: 121 ALVRFYQADYHDQPVRIAALLQPVYDDSIRGIALIQVGETMEGRNGMTRKILFDTLWRQG 180 ALVRFYQADYHDQPVRIAALLQPVYDDSIRGIALIQVGETMEGRNGMTRKILFDTLWRQG Sbjct: 121 ALVRFYQADYHDQPVRIAALLQPVYDDSIRGIALIQVGETMEGRNGMTRKILFDTLWRQG 180 Query: 181 TLVTVAALLVWFAVRFVLRPLMQLKGEVESRAPTDLSGFDTALVHKEMRPLVQAMNGYMG 240 TLVTVAALLVWFAVRFVLRPLMQLKGEVESRAPTDLSGFDTALVHKEMRPLVQAMNGYMG Sbjct: 181 TLVTVAALLVWFAVRFVLRPLMQLKGEVESRAPTDLSGFDTALVHKEMRPLVQAMNGYMG 240 Query: 241 RLQALISAQRRFIADASHQLRTPLTVLKTQSELTLRELRREQVDAAELRDLVEGMARTTD 300 RLQALISAQRRFIADASHQLRTPLTVLKTQSELTLRELRREQVDAAELRDLVEGMARTTD Sbjct: 241 RLQALISAQRRFIADASHQLRTPLTVLKTQSELTLRELRREQVDAAELRDLVEGMARTTD 300 Query: 301 AAVHLANRLLTLARAEHGAAEGGTMPLSLSDAARQVALELSQQAVSREIGLAFEEEGDVS 360 AAVHLANRLLTLARAEHGAAEGGTMPLSLSDAARQVALELSQQAVSREIGLAFEEEGDVS Sbjct: 301 AAVHLANRLLTLARAEHGAAEGGTMPLSLSDAARQVALELSQQAVSREIGLAFEEEGDVS 360 Query: 361 IEANALLLHELMVNLLDNAIRYTPAGGHVTLRVRAQSHPGQPTVALLEVEDSGPGIPAAE 420 IEANALLLHELMVNLLDNAIRYTPAGGHVTLRVRAQS PGQPTVALLEVEDSGPGIPAAE Sbjct: 361 IEANALLLHELMVNLLDNAIRYTPAGGHVTLRVRAQSSPGQPTVALLEVEDSGPGIPAAE 420 Query: 421 REKVFEPFYRAGATQHVNPGGTGLGLSIVREIAAMHRASVTLDAPAQGSGLVVRIVFQGV 480 REKVFEPFYRAGATQHVNPGGTGLGLSIVREIAAMHRASVTLDAPAQGSGLVVRIVFQGV Sbjct: 421 REKVFEPFYRAGATQHVNPGGTGLGLSIVREIAAMHRASVTLDAPAQGSGLVVRIVFQGV 480 Query: 481 LQLRV 485 +QLRV Sbjct: 481 VQLRV 485 >gi|300314014|ref|YP_003778106.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 467 Score = 287 bits (734), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 170/462 (36%), Positives = 263/462 (56%), Gaps = 19/462 (4%) Query: 1 MAGTPRRLGSLRSQLVRWLLIPLTLLVAVDAVSVYYNALEVADLAYDRSLLASTRALAER 60 MA R S+R+ L+ W++ P+ L + +D+ S+Y N LE + AYDR L+AS ++ + Sbjct: 1 MAHLFSRRRSVRAYLLAWIISPIALFIIIDSFSLYRNTLESVNTAYDRMLIASVHSIGDL 60 Query: 61 VSVVDGHVTADVPYVALDSFETDNLGRIYYKVTGLNGELVSGYDDLPPVPPDVKRSEVYP 120 + + +G + A +PY AL+ +E D R+ Y++ GL+G+ G DLP + +YP Sbjct: 61 LRIENGELKASLPYAALEIYEADYSSRMIYRINGLDGKFFDGDADLPSYKGKADKEAIYP 120 Query: 121 ALVRFYQADYHDQPVRIAALLQPVYDDSIRGIALIQVGETMEGRNGMTRKILFDTLWRQG 180 AL Y+ Y+ PVR+AAL QPV + RG AL+QV ETME R+ + RKI ++TL RQ Sbjct: 121 ALAHIYEDTYNGVPVRVAALFQPVVTNDPRGAALVQVAETMENRSALARKIFWETLIRQA 180 Query: 181 TLVTVAALLVWFAVRFVLRPLMQLKGEVESRAPTDLSGFDTALVHKEMRPLVQAMNGYMG 240 L+ V + + VR L+P+ L+ +++ R DLS + +E++P + A+N M Sbjct: 181 ALLVVIVSVTLYVVRRALQPVDALRRQLDERPADDLSPVAPPMAPRELQPFIDALNQLMA 240 Query: 241 RLQALISAQRRFIADASHQLRTPLTVLKTQSELTLRELRREQVDAAELRDLVEGMARTTD 300 RL+ L+ Q+RF+A+ASHQLRTPL VLKTQ + LR A + + M+ T + Sbjct: 241 RLRRLLDHQQRFVANASHQLRTPLAVLKTQLQSGLR-------GDAPAPVIWQEMSGTVE 293 Query: 301 AAVHLANRLLTLARAEHGAAEGGTMPLSLSDAARQVALELSQQAVSREIGLAFEEEGDVS 360 A LAN+LL+LA+ E G L AR+ A++LS +++ E E + Sbjct: 294 RATTLANQLLSLAKVEQIRGRGAQEVCDLGMLARETAVDLSPLIAEKDLDFELEAE-KIL 352 Query: 361 IEANALLLHELMVNLLDNAIRYTPAGGHVTLRVRAQSHPGQPTVALLEVEDSGPGIPAAE 420 + + ++ EL+ NLL NAIR+TPA G + +R+ A+ VA L + DSG GI Sbjct: 353 VMGHPWMIGELISNLLHNAIRHTPAQGRLGIRITARED-----VAELLIWDSGEGIDDQA 407 Query: 421 REKVFEPFYRAGATQHVNPGGTGLGLSIVREIAAMHRASVTL 462 E VF+ F + +V+ G GLGL+I EI +A+++L Sbjct: 408 MENVFKAF-----SSNVSSAG-GLGLTICGEIVDSMQATISL 443 >gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 255 bits (652), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 166/457 (36%), Positives = 251/457 (54%), Gaps = 21/457 (4%) Query: 21 IPLTLLVAVDAVSVYYNALEVADLAYDRSLLASTRALAERVSVVDGHVTADVPYVALDSF 80 IP+ + V + Y NA+ A L DR+LLAS R +A +V DG VP AL+ F Sbjct: 15 IPMAVYVGLSTSDAYDNAVSSATLVQDRALLASARMIAGQVGWNDGAPVVSVPPAALELF 74 Query: 81 ETDNLGRIYYKVTGLNGELVSGYDDLPPVPPDVKRSEVYPALVRFYQADYHDQPVRIAAL 140 + +YY+V + L++G D P P + +YP + ++ +P+R+ + Sbjct: 75 ASPAQDAVYYQVLMDDDTLLAGRPDFPAAP---DFAALYPV---YSTTSFNGKPLRVVSY 128 Query: 141 LQPVYDDSIRGIALIQVGETMEGRNGMTRKILFDTLWRQGTLVTVAALLVWFAVRFVLRP 200 ++ ++D+ + + VG+TM+GR M +L RQ L+ +A LV + LRP Sbjct: 129 IRALFDEGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAISLVVLGLTMELRP 188 Query: 201 LMQLKGEVESRAPTDLSGFDTALVHKEMRPLVQAMNGYMGRLQALISAQRRFIADASHQL 260 L+ LK E+ +R P L+ + +E+RP+V+A+N Y+ RL A ++ Q+RF+ADA+HQL Sbjct: 189 LLALKDELATRRPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTVQKRFVADAAHQL 248 Query: 261 RTPLTVLKTQSELTLRELRREQVDAAELRDLVEGMARTTDAAVHLANRLLTLARAEHGAA 320 RTPL V+ +Q + R+L A L L EG TD L N+LL L++AE + Sbjct: 249 RTPLAVIDSQIQFA-RQLDDPARVAQVLASLQEGSRSMTD----LTNKLLLLSQAEASDS 303 Query: 321 EG-GTMPLSLSDAARQVALELSQQAVSREIGLAFEEEGDVS-IEANALLLHELMVNLLDN 378 P+ L + V ELS A+ + I L E + + + N L +++NL+DN Sbjct: 304 SAFPRAPVDLLAVSAMVLEELSGLALKKGIDLGLETTLESAMVNGNEAQLMGMLMNLIDN 363 Query: 379 AIRYTPAGGHVTLRVRAQSHPGQPTVALLEVEDSGPGIPAAEREKVFEPFYRAGATQHVN 438 A+RYTP GG VT+ + + + ++ V D+GPGIPA RE+VFE FYR A Sbjct: 364 ALRYTPEGGKVTVGLEKKR-----SQMIITVSDNGPGIPAEVRERVFERFYRNAAPDQ-- 416 Query: 439 PGGTGLGLSIVREIAAMHRASVTLDAPAQGSGLVVRI 475 G+GLGL+IVREI + S+ LDAPAQGSGLV + Sbjct: 417 -PGSGLGLAIVREIVQASQGSIRLDAPAQGSGLVATV 452 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 243 bits (619), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 152/387 (39%), Positives = 229/387 (59%), Gaps = 23/387 (5%) Query: 106 LPPVPPDVKRSEVYPALVRFYQADYHDQPVRIAALLQPVYDDSIRG-------IALIQVG 158 +P PPD RS V V+F H VRIA L + + + +A +QVG Sbjct: 1 MPQPPPDEDRSTV--GTVQFRNDILHGSDVRIATLQVDLRRSAAQRAASREPRLATVQVG 58 Query: 159 ETMEGRNGMTRKILFDTLWRQGTLVTVAALLVWFAVRFVLRPLMQLKGEVESRAPTDLSG 218 ET+E R + +I+ + Q ++ VA LVWFA+ L PL +L+ + +R P DLS Sbjct: 59 ETLEKRAQLANEIIKGVILPQFIILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSP 118 Query: 219 FDTALVHKEMRPLVQAMNGYMGRLQALISAQRRFIADASHQLRTPLTVLKTQSELTLREL 278 D+ V +E+ PLV+++N + RL I+ Q+RFIADA+HQ++TPL ++ QSEL LR Sbjct: 119 IDSGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELALR-- 176 Query: 279 RREQVDAAELRDLVEGMARTTDAAVHLANRLLTLARAEHGAAE-GGTMPLSLSDAARQVA 337 Q D ++R +E +A++++ A L N+LL+LARAE+ ++ GG +P+ L++ AR V Sbjct: 177 ---QDDQVDVRRSLEQLAKSSETATRLVNQLLSLARAENQQSQSGGMIPVELNELARSVV 233 Query: 338 LELSQQAVSREIGLAFEE-EGDVSIEANALLLHELMVNLLDNAIRYTPAGGHVTLRVRAQ 396 + + ++ I L FE+ + + I N ++L EL+ NLLDNA+ YTP G+ + VRA+ Sbjct: 234 QDWVPMSFTQRIDLGFEQPDHPILITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRAR 293 Query: 397 SHPGQPTVALLEVEDSGPGIPAAEREKVFEPFYRAGATQHVNPGGTGLGLSIVREIAAMH 456 + G +A+LEVED+GPGIP AER VFE FYR T G GLGL+IVREIA H Sbjct: 294 TDEGG-GLAILEVEDNGPGIPVAERANVFERFYRILGTPSTG-SGLGLGLAIVREIAQQH 351 Query: 457 RASVTLDAPAQGS-----GLVVRIVFQ 478 A++ + + + + G V R+ F+ Sbjct: 352 EAALEITSNPRSTDPKYPGCVFRVSFR 378 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 211 bits (536), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 157/469 (33%), Positives = 235/469 (50%), Gaps = 24/469 (5%) Query: 10 SLRSQLVRWLLIPLTLLVAVDAVSVYYNALEVADLAYDRSLLASTRALAERVSVVDGHVT 69 S+R L++WL+ PL L+ + A Y+ A A A+D++L+ ST L +V T Sbjct: 7 SIRRDLLKWLIAPLLLVNLIGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQERTT 66 Query: 70 ADVPYVALDSFETDNLGRIYYKVTGLNGELVSGYDDLPPVPPDVKRSEVYPALVRFYQAD 129 A++ A +++ ++ V G++V G P +P S+V+ + Y + Sbjct: 67 AELTQQAEQILRSNHSDTTFFAVRNTEGQIVVGDKGFPQLPA----SDVFDRPIN-YDGE 121 Query: 130 YHDQPVRIAALLQPVYDDSIRGIALIQVGETMEGRNGMTRKILFDTLWRQGTLVTVAALL 189 +PVRIAA+ V + G+ + V ET+ R+ IL L G L + + Sbjct: 122 MRGEPVRIAAMQVRVKN----GVIWVAVAETIRKRDRAHYTILLSFLVLDGALTFASIFV 177 Query: 190 VWFAVRFVLRPLMQLKGEVESRAPTDLSGFDTALVHKEMRPLVQAMNGYMGRLQALISAQ 249 V AVR LRPL L+ +E R L D E++PL+ AMN M R+ AQ Sbjct: 178 VLVAVRRGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKGEQAQ 237 Query: 250 RRFIADASHQLRTPLTVLKTQSELTLRELRREQVDAAELRDLVEGMARTTDAAVHLANRL 309 + F+AD +HQLRTPLT LK Q EL L + ++Q D A R L M + + + + +L Sbjct: 238 QNFMADVAHQLRTPLTGLKLQLEL-LHDKHQDQPDTA--RSLAM-MNSSVERMIRQSRQL 293 Query: 310 LTLARAEHGAAEGGTM-PLSLSDAARQVALELSQQAVSREIGLAFEEEGDVSIEANALLL 368 L LAR+E G E + LSL + ++A + I L F+ + + LL Sbjct: 294 LALARSEPGLFESRKLEELSLDKLVEESVQHFIEEADKKRIDLGFDLR-PARLRGDRFLL 352 Query: 369 HELMVNLLDNAIRYTPAGGHVTLRVRAQSHPGQPTVALLEVEDSGPGIPAAEREKVFEPF 428 +L+ NL+DNA+RY+P G VT+R + +L VEDSGPGI RE +F+ F Sbjct: 353 SDLIDNLIDNAVRYSPPHGTVTVRCLEEQ-----DATVLSVEDSGPGIAPEHRELIFDRF 407 Query: 429 YRAGATQHVNPGGTGLGLSIVREIAAMHRASVTLDAPAQGSGLVVRIVF 477 YRA G+GLGL+IVREIA H +++D QG G + + F Sbjct: 408 YRAND----KVAGSGLGLAIVREIAHDHGGVISVDCKEQGQGTIFTVRF 452 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,551,384 Number of extensions: 67985 Number of successful extensions: 428 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 359 Number of HSP's successfully gapped: 34 Length of query: 485 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 396 Effective length of database: 1,198,455 Effective search space: 474588180 Effective search space used: 474588180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)