BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0234.p
         (320 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313817|ref|YP_003777909.1| tricarboxylic acid transport pr...   643   0.0  
gi|300312630|ref|YP_003776722.1| hypothetical protein Hsero_3333...    66   4e-12

>gi|300313817|ref|YP_003777909.1| tricarboxylic acid transport
           protein [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/320 (99%), Positives = 320/320 (100%)

Query: 1   MLASRWRSLLAACLLACLGPCALAAECIVPAKPGGGMDASCKLLQRVMQEEGEPRSLKLS 60
           MLASRWRSLLAACLLACLGPCALAAECIVPAKPGGGMDASCKLLQRVMQEEGEPRSLKLS
Sbjct: 1   MLASRWRSLLAACLLACLGPCALAAECIVPAKPGGGMDASCKLLQRVMQEEGEPRSLKLS 60

Query: 61  YLPGGIGAVAWSSVVSQRRGGPDTLVAFSGGSLLGLAQGKYGKAVPDDVRWVAGIGIDHG 120
           YLPGGIGAVAWSSVVSQRRGGPDTLVAFSGGSLLGLAQGKYGKAVPDDVRWVAGIGIDHG
Sbjct: 61  YLPGGIGAVAWSSVVSQRRGGPDTLVAFSGGSLLGLAQGKYGKAVPDDVRWVAGIGIDHG 120

Query: 121 MIAVRSDAPWRNLKQLLQAIRRDPSAVTIGLSGTVGSQDWLKMALLGQRAGIVPRQFRFV 180
           MIAVRSDAPWRNLKQLLQAIRRDPSAVTIGLSGTVGSQDWLKMALLGQRAGIVPRQFRFV
Sbjct: 121 MIAVRSDAPWRNLKQLLQAIRRDPSAVTIGLSGTVGSQDWLKMALLGQRAGIVPRQFRFV 180

Query: 181 ALEGGGDSFAALQAGHVQVISGDASEAAYFMAEGKVRVLAVLSEQRLPGPLQAVPTAREQ 240
           ALEGGGDSFAALQAGHVQVISGDASEAAYFMAEGKVRVLAVLSEQRLPGPLQAVPTAREQ
Sbjct: 181 ALEGGGDSFAALQAGHVQVISGDASEAAYFMAEGKVRVLAVLSEQRLPGPLQAVPTAREQ 240

Query: 241 GYEVVWPIIRGFYMSPHVPEADYQRWVRYFDRMMADPVFLAQRSTSGLQPFAMTGSQVSQ 300
           GYEVVWPIIRGFYMSPHVPEADYQRWVRYFDRMMADPVFLAQRSTSGLQPFAMTGSQ+SQ
Sbjct: 241 GYEVVWPIIRGFYMSPHVPEADYQRWVRYFDRMMADPVFLAQRSTSGLQPFAMTGSQLSQ 300

Query: 301 YINQTVTQYRKQSQELGLVR 320
           YINQTVTQYRKQSQELGLVR
Sbjct: 301 YINQTVTQYRKQSQELGLVR 320


>gi|300312630|ref|YP_003776722.1| hypothetical protein Hsero_3333
           [Herbaspirillum seropedicae SmR1]
          Length = 339

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 108/229 (47%), Gaps = 16/229 (6%)

Query: 7   RSLLAACL-LACLG-PCALAA------ECIVPAKPGGGMDASCKLLQRVMQEE-GEPRSL 57
           +SL+A  + L+ L  PCA AA        +VP   GGG DA+ +++  +++++ G+P  +
Sbjct: 22  KSLMAGTVALSVLAAPCAFAAWPERPVTLVVPWGAGGGTDATARIIGALLEKDLGQP--V 79

Query: 58  KLSYLPGGIGAVAWSSVVSQRRGGPDTLVAFSGGSLLGLAQGKYGKAVPDDVRWVAGIGI 117
            +    GG GAV   ++ S    G    +A    S++   QG   K  P D   +A +  
Sbjct: 80  NVVNRTGGNGAVGHQAIASAAPDGYTIGIATVEISMMH-HQG-LTKLTPRDFTPLALMNF 137

Query: 118 DHGMIAVRSDAPWRNLKQLLQAIRRDPSAVTIGLSGTVGSQDW-LKMALLGQRAGIVPRQ 176
           D   + V  D+P+++   LL+AI+ +P  +    SGT     W L +A +     + P  
Sbjct: 138 DPAALTVSHDSPYKSFDDLLKAIKANPGKLKA--SGTGQGGIWHLGLAGMLNDLKVAPNA 195

Query: 177 FRFVALEGGGDSFAALQAGHVQVISGDASEAAYFMAEGKVRVLAVLSEQ 225
            RFV   G   +   L AG V +++    EA   +  GK   L V++ +
Sbjct: 196 VRFVPSNGAAPAMVDLAAGGVDIVAASLPEARSLIDAGKAVPLVVMANE 244


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,084,938
Number of extensions: 49126
Number of successful extensions: 170
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 2
Length of query: 320
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 235
Effective length of database: 1,217,395
Effective search space: 286087825
Effective search space used: 286087825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)