BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0232.p (879 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313815|ref|YP_003777907.1| Fe3+ ABC transporter permease [... 1141 0.0 gi|300313833|ref|YP_003777925.1| sugar ABC transporter permease ... 61 5e-10 gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permeas... 59 2e-09 gi|300309782|ref|YP_003773874.1| sugar ABC transporter permease ... 58 4e-09 gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permeas... 58 4e-09 >gi|300313815|ref|YP_003777907.1| Fe3+ ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 603 Score = 1141 bits (2952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 582/586 (99%), Positives = 582/586 (99%) Query: 1 MQTTTTLPRSEQALPARRFRLNWPRGLVVLLAALAIFVPLLLIFYQSFLSAPFFAPVKEL 60 MQTTTTLPRSEQALPARRFRLNWPRGLVVLLAALAIFVPLLLIFYQSFLSAPFFAPVKEL Sbjct: 1 MQTTTTLPRSEQALPARRFRLNWPRGLVVLLAALAIFVPLLLIFYQSFLSAPFFAPVKEL 60 Query: 61 TFDSYRFIFDDPDFRQAFVNGLTLATGLALIAVPLGGMLAFLMVRTDLPGRSFIAPALMV 120 TFDSYRFIFDDPDFRQAFVNGLTLATGLALIAVPLGGMLAFLMVRTDLPGRSFIAPALMV Sbjct: 61 TFDSYRFIFDDPDFRQAFVNGLTLATGLALIAVPLGGMLAFLMVRTDLPGRSFIAPALMV 120 Query: 121 PIFVSPMVIGFGYVVSMGPVGFYTVWVKNLLSVFGFEGDPWNIYSFTSIVIIAGLTHVPH 180 PIFVSPMVIGFGYVVSMGPVGFYTVWVKNLLSVFGFEGDPWNIYSFTSIVIIAGLTHVPH Sbjct: 121 PIFVSPMVIGFGYVVSMGPVGFYTVWVKNLLSVFGFEGDPWNIYSFTSIVIIAGLTHVPH 180 Query: 181 VYLYASAALRSLGSDVEEAARVAGASPLQVALNVSLPMIMPALAYSGVLVFFLGFEVFGL 240 VYLYASAALRSLGSDVEEAARVAGASPLQVALNVSLPMIMPALAYSGVLVFFLGFEVFGL Sbjct: 181 VYLYASAALRSLGSDVEEAARVAGASPLQVALNVSLPMIMPALAYSGVLVFFLGFEVFGL 240 Query: 241 VLVLGDPEGHLVLPTYLYKLTNKLGTPSYHLMAAVAVCLVAVTMPLVMLQRWLLRSANKY 300 VLVLGDPEGHLVLPTYLYKLTNKLGTPSYHLMAAVAVCLVAVTMPLVMLQRWLLRSANKY Sbjct: 241 VLVLGDPEGHLVLPTYLYKLTNKLGTPSYHLMAAVAVCLVAVTMPLVMLQRWLLRSANKY 300 Query: 301 VAIKGKGARQKALPLGKWRWVAFVLIAGWLLFTVIIPLSGIGLRTFVSHWGDGVSLLEVL 360 VAIKGKGARQKALPLGKWRWVAFVLIAGWLLFTVIIPLSGIGLRTFVSHWGDGVSLLEVL Sbjct: 301 VAIKGKGARQKALPLGKWRWVAFVLIAGWLLFTVIIPLSGIGLRTFVSHWGDGVSLLEVL 360 Query: 361 TFENLLNVWDQPSLVRGIINTVLIGVIGGALAVACYTAIALAMHRKQDGVTRFLDYSVLV 420 TFENLLNVWDQPSLVRGIINTVLIGVIGGALAVACYTAIALAMHRKQDGVTRFLDYSVLV Sbjct: 361 TFENLLNVWDQPSLVRGIINTVLIGVIGGALAVACYTAIALAMHRKQDGVTRFLDYSVLV 420 Query: 421 PRAVPGLLAGLSFLWVFLFVPSLLDSALKGIDNPIALWLVDSFIPALRGLRSTIFSVWLA 480 PRAVPGLLAGLSFLWVFLFVPSLLDSALKGIDNPIALWLVDSFIPALRGLRSTIFSVWLA Sbjct: 421 PRAVPGLLAGLSFLWVFLFVPSLLDSALKGIDNPIALWLVDSFIPALRGLRSTIFSVWLA 480 Query: 481 YSVVWMAYGLRLINTALLQVGPELEEAARAVGASRSRVTRDVTLPLVRYGLVGAWLMVFL 540 YSVVWMAYGLRLINTALLQVGPELEEAARAVGASRSRVTRDVTLPLVRYGLVGAWLMVFL Sbjct: 481 YSVVWMAYGLRLINTALLQVGPELEEAARAVGASRSRVTRDVTLPLVRYGLVGAWLMVFL 540 Query: 541 IFEREYSTGVYLLSPGTEVIGSMIVSMWAAGAVELVAALSFDGAHL 586 IFEREYSTGVYLLSPGTEVIGSMIVSMWAAGAVELVAALSF L Sbjct: 541 IFEREYSTGVYLLSPGTEVIGSMIVSMWAAGAVELVAALSFINITL 586 >gi|300313833|ref|YP_003777925.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 304 Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 38/263 (14%) Query: 63 DSYRFIFDDPDFRQAFVNGLTLATGLALIAV----PLGGMLAFLMVRTDLPGRSFIAPAL 118 D+YR I DPD+ AF N + I + P+G +LA L L G + Sbjct: 51 DNYRTILFDPDWSAAFWNAMWNNVKFFCIHMALQNPIGLLLATLFSLKGLRGARTYRTLI 110 Query: 119 MVPIFVSPMVIGFGYVVSMGP---VGFYTVWVKNLLSVFGFEG--DPWNIYSFTSIVIIA 173 +P +S ++IGF + + + P VG + LL G PW T+++ ++ Sbjct: 111 FLPTLLSVVIIGFIWQLILSPLWGVG------EKLLGTVGLADWFAPWLGQESTALLTLS 164 Query: 174 GLT-----HVPHVYLYASAALRSLGSDVEEAARVAGASPLQVALNVSLPMIMPALAYSGV 228 ++ +P + +YA AL ++ +V EAA GAS +++ + LP+I P L + Sbjct: 165 LISVWQYVGIPMMLIYA--ALLAVPEEVLEAAHAEGASAMRIFWQIKLPLIYPTLGLVTI 222 Query: 229 LVFFLGFEVFGLVLVL-----GDPEGHLVLPTYLYK----LTNKLGTPSYHLMAAVAVCL 279 L F F F L+ + G +L TY Y+ ++G+P+ + AAVA + Sbjct: 223 LTFVANFNAFDLIYSVKGALAGPNYASDLLGTYFYRTFFGYQAQIGSPT--MGAAVATLM 280 Query: 280 VAVTM-----PLVMLQRWLLRSA 297 V + V++QR L R A Sbjct: 281 FLVILGGVGAYFVLVQRRLTRYA 303 >gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 299 Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 79/298 (26%), Positives = 127/298 (42%), Gaps = 38/298 (12%) Query: 15 PARRFRLNWPRGLVVLLA----ALAIFVPLLLIFYQSFLSAPFFAPVKELTFDSYRFIFD 70 PA W R L++ +A L +FVPL+ +FY++ +D Y Sbjct: 22 PAATAEPFWVRALLIGIALAFLTLFLFVPLVAVFYEALRKG----------WDVYVASIT 71 Query: 71 DPDFRQAFVNGLTLATGLALIAVPL----GGMLAFLMVRTDLPGRSFIAPALMVPIFVSP 126 + D A LTL T A IAVPL G A+ + + + G++ + + +P VSP Sbjct: 72 EADAWSAI--KLTLIT--AAIAVPLNLVFGVAAAWAIAKFEFRGKNLLLTLIDLPFSVSP 127 Query: 127 MVIGFGYVVSMGPVGFYTVWVKNLLSVFGFEGDPWNIYSFTSIVIIAGLTHVPHVYLYAS 186 ++ G YV+ G G+ W++ E D +++ IV+ P V Sbjct: 128 VISGLIYVLLFGLQGYLGPWLR--------EHDIKILFAVPGIVLATIFVTFPFVARELI 179 Query: 187 AALRSLGSDVEEAARVAGASPLQVALNVSLPMIMPALAYSGVLVFFLGFEVFGLVLVLGD 246 ++S GS+ EEAA V GAS + +V+LP I L Y +L FG V V+ Sbjct: 180 PLMQSQGSEEEEAALVLGASGWRTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVS- 238 Query: 247 PEGHL-----VLPTYLYKLTNKLGTPSYHLMAAVAVCLVAVTMPLVMLQRWLLRSANK 299 GH+ +P + L N+ +A++ L VT+ + + W L + Sbjct: 239 --GHIRGETNTIPLQVEILYNEFNITGAFAVASLLAFLALVTLAIKSVIEWRLHQQHS 294 >gi|300309782|ref|YP_003773874.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 324 Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 104/228 (45%), Gaps = 17/228 (7%) Query: 1 MQTTTTLP--RSEQALPARRFRLNWPR-----GLVVLLAALAIFVPLLLIFYQSFLSAPF 53 M +T+ P R +Q P R+ R N R +++LLA + VPL + Y S Sbjct: 15 MMQSTSQPASRRQQTSPPRKERFNPIRLMQTPSVLILLAWM--IVPLAMTIYFSVNRYNL 72 Query: 54 FAPVKE--LTFDSYRFIFDDPDFRQAFVNGLTLATGLALIAVPLGGMLAFLMVRTDLPGR 111 AP + + ++Y F+ DP F + N L + I+V +GG L ++ GR Sbjct: 73 MAPDQTGFVGLENYAFLLQDPAFWPSIGNTALLIGSVLAISV-IGGTLLAVLFDQPFRGR 131 Query: 112 SFIAPALMVPIFVSPMVIGFGYV-VSMGPVGFYTVWVKNLLSVFGFEGDPW-NIYSFTSI 169 ++ P FV P V + + M PV +V L G E W Y S+ Sbjct: 132 GIARLLVIGPFFVMPTVAALIWKNMIMHPVYGILAYVMRHL---GLEPIDWLAEYPMLSV 188 Query: 170 VIIAGLTHVPHVYLYASAALRSLGSDVEEAARVAGASPLQVALNVSLP 217 +II +P +L AL+SL +D +EAA++ GA P+++ + LP Sbjct: 189 IIIVAWQWIPFAFLILLTALQSLDTDQKEAAQLDGAGPVRIFFYIVLP 236 >gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 291 Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 97/233 (41%), Gaps = 9/233 (3%) Query: 64 SYRFIFDDPDFRQAFVNGLTLATGLALIAVPLGGMLAFLMVRTDLPGRSFIAPALMVPIF 123 +Y + + + + V+ L L+ + + + + + R PG++ + L P+ Sbjct: 62 AYLSVLTNRHYFASLVSTLALSAAVTAATLAISVFVGLFLQRHRFPGQALLLAMLTFPLA 121 Query: 124 VSPMVIGFGYVVSMGPVGFYTVWVKNLLSVFGFEGDPWNIYSFTSIVIIAGLTHVPHVYL 183 +V+GF ++ G G L F YS + + +P V L Sbjct: 122 FPGVVVGFMVIMLAGRQGLIGALTNGL-----FGESLVFAYSLAGLFLGYLYFSIPRVIL 176 Query: 184 YASAALRSLGSDVEEAARVAGASPLQVALNVSLPMIMPALAYSGVLVFFLGFEVFGLVLV 243 AA L +EEAAR GA P QV L+V LP ++PAL SG + F FG Sbjct: 177 TVVAAAEKLDPSLEEAARSLGARPWQVLLHVVLPALLPALVSSGAICFATSVGAFGTAFT 236 Query: 244 LGDPEGHLVLPTYLYKLTNKLGTPSYHLMAAVAVCLVAVTMPLVMLQRWLLRS 296 L VLP +Y G ++ A++++ L +T ++ L R L S Sbjct: 237 LAANID--VLPMTIYN--EFTGYANFATAASLSIVLGVITWAVLALARSLTGS 285 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.142 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,269,141 Number of extensions: 87361 Number of successful extensions: 496 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 479 Number of HSP's successfully gapped: 15 Length of query: 879 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 785 Effective length of database: 1,174,780 Effective search space: 922202300 Effective search space used: 922202300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 135 (56.6 bits)