BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0231.p
         (185 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313815|ref|YP_003777907.1| Fe3+ ABC transporter permease [...   335   1e-93

>gi|300313815|ref|YP_003777907.1| Fe3+ ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 603

 Score =  335 bits (860), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 173/174 (99%), Positives = 173/174 (99%)

Query: 1   VTRFLDYSVLVPRAVPGLLAGLSFLWVFLFVPSLLDSALKGIDNPIALWLVDSFIPALRG 60
           VTRFLDYSVLVPRAVPGLLAGLSFLWVFLFVPSLLDSALKGIDNPIALWLVDSFIPALRG
Sbjct: 410 VTRFLDYSVLVPRAVPGLLAGLSFLWVFLFVPSLLDSALKGIDNPIALWLVDSFIPALRG 469

Query: 61  LRSTIFSVWLAYSVVWMAYGLRLINTALLQVGPELEEAARAVGASRSRVTRDVTLPLVRY 120
           LRSTIFSVWLAYSVVWMAYGLRLINTALLQVGPELEEAARAVGASRSRVTRDVTLPLVRY
Sbjct: 470 LRSTIFSVWLAYSVVWMAYGLRLINTALLQVGPELEEAARAVGASRSRVTRDVTLPLVRY 529

Query: 121 GLVGAWLMVFLIFEREYSTGVYLLSPGTEVIGSMIVSMWAAGAVELVAALSFIG 174
           GLVGAWLMVFLIFEREYSTGVYLLSPGTEVIGSMIVSMWAAGAVELVAALSFI 
Sbjct: 530 GLVGAWLMVFLIFEREYSTGVYLLSPGTEVIGSMIVSMWAAGAVELVAALSFIN 583


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 559,629
Number of extensions: 20713
Number of successful extensions: 139
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,241,070
Effective search space: 130312350
Effective search space used: 130312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)