BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0220.p (299 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313807|ref|YP_003777899.1| AraC family transcription regul... 610 e-176 gi|300313797|ref|YP_003777889.1| AraC family transcription regul... 124 1e-29 gi|300311694|ref|YP_003775786.1| AraC family transcription regul... 68 1e-12 gi|300309514|ref|YP_003773606.1| AraC family transcription regul... 59 5e-10 >gi|300313807|ref|YP_003777899.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 610 bits (1573), Expect = e-176, Method: Compositional matrix adjust. Identities = 298/299 (99%), Positives = 298/299 (99%) Query: 1 MAALAPLSTIAERSDSLGCSARSLKHSQELQGSDFSFYRKRVESEEIAQVVTPASDRGFL 60 MAALAPLSTIAERSDSLGCSARSLKHSQELQGSDFSFYRKRVE EEIAQVVTPASDRGFL Sbjct: 1 MAALAPLSTIAERSDSLGCSARSLKHSQELQGSDFSFYRKRVEGEEIAQVVTPASDRGFL 60 Query: 61 LGISLAPHRRSIFRGRQGAKFEFAPGAIYTRDFSEDYRADLQAPFDFLLVEMPLSWFAAA 120 LGISLAPHRRSIFRGRQGAKFEFAPGAIYTRDFSEDYRADLQAPFDFLLVEMPLSWFAAA Sbjct: 61 LGISLAPHRRSIFRGRQGAKFEFAPGAIYTRDFSEDYRADLQAPFDFLLVEMPLSWFAAA 120 Query: 121 SDELRRRRVAGLATVTGQHDPVLQHLAYALTPALANPDPDSRLFIDQLGVALGTHLLQRY 180 SDELRRRRVAGLATVTGQHDPVLQHLAYALTPALANPDPDSRLFIDQLGVALGTHLLQRY Sbjct: 121 SDELRRRRVAGLATVTGQHDPVLQHLAYALTPALANPDPDSRLFIDQLGVALGTHLLQRY 180 Query: 181 GGAPAPTLRTAPLSRLHEERAKMMLLEKVKGNVSIPEIARECNMSASYFLRAFKASTGHT 240 GGAPAPTLRTAPLSRLHEERAKMMLLEKVKGNVSIPEIARECNMSASYFLRAFKASTGHT Sbjct: 181 GGAPAPTLRTAPLSRLHEERAKMMLLEKVKGNVSIPEIARECNMSASYFLRAFKASTGHT 240 Query: 241 PHQWLMVQRVEMAQQYLRSTQLTLAEIALACDFYDQSHFSRVFSQVVGSTPGAWRRRLR 299 PHQWLMVQRVEMAQQYLRSTQLTLAEIALACDFYDQSHFSRVFSQVVGSTPGAWRRRLR Sbjct: 241 PHQWLMVQRVEMAQQYLRSTQLTLAEIALACDFYDQSHFSRVFSQVVGSTPGAWRRRLR 299 >gi|300313797|ref|YP_003777889.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 124 bits (310), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/220 (36%), Positives = 112/220 (50%), Gaps = 9/220 (4%) Query: 86 GAIYTRDFSEDYRADLQAPFDFLLVEMPLSWFAAASDELRRRRVAGLATVTGQHDPVLQH 145 G + D E +R + ++ + + +P + +E+ R V L V G DPVL H Sbjct: 74 GEVAVTDLREQWRCQHLSGYENVRLLVPRTAMEELGEEIARP-VGELRPVQGAADPVLFH 132 Query: 146 LAYALTPALANPDPDSR-------LFIDQLGVALGTHLLQRYGGAPA-PTLRTAPLSRLH 197 LA A+ PA LF+D + +AL THL QRYG + P L+ Sbjct: 133 LAQAMLPAARTAGAAGAASVASETLFLDSMMLALTTHLWQRYGQQSSRPASAAGRLAGWQ 192 Query: 198 EERAKMMLLEKVKGNVSIPEIARECNMSASYFLRAFKASTGHTPHQWLMVQRVEMAQQYL 257 E R + +L + +S+ EIA + +S ++F RAFK S G +PH WL QR+ +A + L Sbjct: 193 EARVRDFMLSHLAQRLSLAEIAAQSGLSRAHFSRAFKQSFGLSPHAWLQQQRIALACRLL 252 Query: 258 RSTQLTLAEIALACDFYDQSHFSRVFSQVVGSTPGAWRRR 297 ++ IAL C F DQSHFSRVF QV G P AW RR Sbjct: 253 HEGGKSMTTIALECGFSDQSHFSRVFKQVQGMGPAAWLRR 292 >gi|300311694|ref|YP_003775786.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 375 Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 55/99 (55%) Query: 199 ERAKMMLLEKVKGNVSIPEIARECNMSASYFLRAFKASTGHTPHQWLMVQRVEMAQQYLR 258 ++A + L E + ++++ E A +MS F R FK TG TPH +L R+E A YL+ Sbjct: 256 QKALIWLDEHMSSSINMSEAADHVSMSERNFQREFKRETGETPHCFLTKIRIEAACLYLK 315 Query: 259 STQLTLAEIALACDFYDQSHFSRVFSQVVGSTPGAWRRR 297 T L + +IA C H +R+F + G +PG +R++ Sbjct: 316 ETDLPIEKIARRCGLVSGEHLARLFRKHHGVSPGEYRKK 354 >gi|300309514|ref|YP_003773606.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 323 Score = 58.9 bits (141), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 54/100 (54%) Query: 200 RAKMMLLEKVKGNVSIPEIARECNMSASYFLRAFKASTGHTPHQWLMVQRVEMAQQYLRS 259 +A +L+ + S+P +A C+MS + F+R F TP Q LM R+ A + L Sbjct: 217 KAMQAMLKAPAEDWSLPRLAALCHMSRATFIRRFAEVGASTPAQVLMQLRMAQAARLLSY 276 Query: 260 TQLTLAEIALACDFYDQSHFSRVFSQVVGSTPGAWRRRLR 299 ++ A+I A + ++ F+RVF + G PGA+RR+ R Sbjct: 277 SKQATAQIGEAVGYQSEAAFNRVFRKYSGMGPGAYRRQAR 316 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 982,568 Number of extensions: 41726 Number of successful extensions: 160 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 158 Number of HSP's successfully gapped: 4 Length of query: 299 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 214 Effective length of database: 1,217,395 Effective search space: 260522530 Effective search space used: 260522530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)