BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0211.p
         (177 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313798|ref|YP_003777890.1| low temperature-induced protein...   332   8e-93
gi|300309772|ref|YP_003773864.1| DNA-binding ferritin-like prote...    82   3e-17

>gi|300313798|ref|YP_003777890.1| low temperature-induced protein
           [Herbaspirillum seropedicae SmR1]
          Length = 162

 Score =  332 bits (852), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 159/162 (98%), Positives = 161/162 (99%)

Query: 16  MAPLATPGVLSEQARQEVGGALTMLLADIFALYLKTKNFHWHMSGPHFRDYHLLLDDQSQ 75
           MAPLATPGVLSEQARQEVGGALTMLLAD+FALYLKTKNFHWHMSGPHFRDYHLLLDDQSQ
Sbjct: 1   MAPLATPGVLSEQARQEVGGALTMLLADVFALYLKTKNFHWHMSGPHFRDYHLLLDDQSQ 60

Query: 76  QIIAITDAVAERVRKIGGATLRSTGHIGKLQRLADNDADFVTPADMLAELREDNLRLVGF 135
           QIIAITDAVAERVRKIGG TLRSTGHIGKLQRL+DNDADFVTPADMLAELREDNLRLVGF
Sbjct: 61  QIIAITDAVAERVRKIGGTTLRSTGHIGKLQRLSDNDADFVTPADMLAELREDNLRLVGF 120

Query: 136 MMATHELCDQHGDVATASLLENWIDEAEQRAWFLFESGRSSF 177
           MMATHELCDQHGDVATASLLENWIDEAEQRAWFLFESGRSSF
Sbjct: 121 MMATHELCDQHGDVATASLLENWIDEAEQRAWFLFESGRSSF 162


>gi|300309772|ref|YP_003773864.1| DNA-binding ferritin-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 164

 Score = 81.6 bits (200), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 4/159 (2%)

Query: 12  EKRRMAPLATPGVLSEQARQEVGGALTMLLADIFALYLKTKNFHWHMSGPHFRDYHLLLD 71
           +K   AP    G+ +++ R+++   L+ LLAD + LYLKT NFHW+++GP F   HL+ +
Sbjct: 3   KKNVAAPSINIGI-NDKDRKKIADGLSKLLADTYTLYLKTHNFHWNVTGPMFNTLHLMFE 61

Query: 72  DQSQQIIAITDAVAERVRKIGGATLRSTGHIGKLQRLADNDADFVTPA-DMLAELREDNL 130
            Q  ++    D +AER+R +G     S     KL  +   +AD V  A +M+A+L     
Sbjct: 62  GQYNELALAVDLIAERIRALGYPAPGSYKEFAKLSSIP--EADGVPNAQEMIAQLVAGQE 119

Query: 131 RLVGFMMATHELCDQHGDVATASLLENWIDEAEQRAWFL 169
            +     +     D   D  TA LL   +   E+ AW L
Sbjct: 120 AVTRTARSIFPTVDAAADEPTADLLTQRMQLHEKNAWML 158


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 555,761
Number of extensions: 21438
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 2
Length of query: 177
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 98
Effective length of database: 1,245,805
Effective search space: 122088890
Effective search space used: 122088890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)