BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0210.p (297 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313797|ref|YP_003777889.1| AraC family transcription regul... 552 e-158 gi|300313807|ref|YP_003777899.1| AraC family transcription regul... 125 4e-30 gi|300311694|ref|YP_003775786.1| AraC family transcription regul... 62 6e-11 gi|300313159|ref|YP_003777251.1| AraC family transcription regul... 59 6e-10 gi|300309514|ref|YP_003773606.1| AraC family transcription regul... 55 5e-09 >gi|300313797|ref|YP_003777889.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 552 bits (1423), Expect = e-158, Method: Compositional matrix adjust. Identities = 293/297 (98%), Positives = 294/297 (98%), Gaps = 3/297 (1%) Query: 1 MQDSPSRFMKLIPLQHGMALVHAAQAQPQARVPAPVIEIPGADAWSVIVQLQDFREHRLW 60 MQDSPSRFMKLIPLQHGMALVHAAQAQPQARVPAPVIEIPGADAWSVIVQLQDFREH+LW Sbjct: 1 MQDSPSRFMKLIPLQHGMALVHAAQAQPQARVPAPVIEIPGADAWSVIVQLQDFREHKLW 60 Query: 61 RGQRLVHAGAHRRGEVAVTDLREQWRCQHLSGYENVRLLVPRTAMEELGEEIARPVGELR 120 RGQRLVHAGAHRRGEVAVTDLREQWRCQHLSGYENVRLLVPRTAMEELGEEIARPVGELR Sbjct: 61 RGQRLVHAGAHRRGEVAVTDLREQWRCQHLSGYENVRLLVPRTAMEELGEEIARPVGELR 120 Query: 121 PVQGAADPVLFHLAQAMLPAARTAGAAGAASVPSVASETLFLDSMMLALTTHLWQRYGQQ 180 PVQGAADPVLFHLAQAMLPAARTAGAAGAA SVASETLFLDSMMLALTTHLWQRYGQQ Sbjct: 121 PVQGAADPVLFHLAQAMLPAARTAGAAGAA---SVASETLFLDSMMLALTTHLWQRYGQQ 177 Query: 181 SSRPASAAGRLAGWQEARVRDFMLSHLAQRLSLAEIAAQSGLSRAHFSRAFKQSFGLSPH 240 SSRPASAAGRLAGWQEARVRDFMLSHLAQRLSLAEIAAQSGLSRAHFSRAFKQSFGLSPH Sbjct: 178 SSRPASAAGRLAGWQEARVRDFMLSHLAQRLSLAEIAAQSGLSRAHFSRAFKQSFGLSPH 237 Query: 241 AWLQQQRIALACRLLHEGGKSMTTIALECGFSDQSHFSRVFKQVQGMGPAAWLRRRS 297 AWLQQQRIALACRLLHEGGKSMTTIALECGFSDQSHFSRVFKQVQGMGPAAWLRRRS Sbjct: 238 AWLQQQRIALACRLLHEGGKSMTTIALECGFSDQSHFSRVFKQVQGMGPAAWLRRRS 294 >gi|300313807|ref|YP_003777899.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 125 bits (314), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 115/223 (51%), Gaps = 12/223 (5%) Query: 74 GEVAVTDLREQWRCQHLSGYENVRLLVPRTAMEELGEEIARP-VGELRPVQGAADPVLFH 132 G + D E +R + ++ + + +P + +E+ R V L V G DPVL H Sbjct: 86 GAIYTRDFSEDYRADLQAPFDFLLVEMPLSWFAAASDELRRRRVAGLATVTGQHDPVLQH 145 Query: 133 LAQAMLPAARTAGAAGAASVPSVASETLFLDSMMLALTTHLWQRYGQQSSRPASAAGRLA 192 LA A+ PA + P S LF+D + +AL THL QRYG + P L+ Sbjct: 146 LAYALTPAL---------ANPDPDSR-LFIDQLGVALGTHLLQRYGGAPA-PTLRTAPLS 194 Query: 193 GWQEARVRDFMLSHLAQRLSLAEIAAQSGLSRAHFSRAFKQSFGLSPHAWLQQQRIALAC 252 E R + +L + +S+ EIA + +S ++F RAFK S G +PH WL QR+ +A Sbjct: 195 RLHEERAKMMLLEKVKGNVSIPEIARECNMSASYFLRAFKASTGHTPHQWLMVQRVEMAQ 254 Query: 253 RLLHEGGKSMTTIALECGFSDQSHFSRVFKQVQGMGPAAWLRR 295 + L ++ IAL C F DQSHFSRVF QV G P AW RR Sbjct: 255 QYLRSTQLTLAEIALACDFYDQSHFSRVFSQVVGSTPGAWRRR 297 >gi|300311694|ref|YP_003775786.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 375 Score = 62.0 bits (149), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 183 RPASAAGRLAGWQEARVRDFMLSHLAQRLSLAEIAAQSGLSRAHFSRAFKQSFGLSPHAW 242 RP R Q+A + ++ H++ ++++E A +S +F R FK+ G +PH + Sbjct: 244 RPGEKRHRSERIQKALI--WLDEHMSSSINMSEAADHVSMSERNFQREFKRETGETPHCF 301 Query: 243 LQQQRIALACRLLHEGGKSMTTIALECGFSDQSHFSRVFKQVQGMGPAAWLRRRS 297 L + RI AC L E + IA CG H +R+F++ G+ P + ++ + Sbjct: 302 LTKIRIEAACLYLKETDLPIEKIARRCGLVSGEHLARLFRKHHGVSPGEYRKKEN 356 >gi|300313159|ref|YP_003777251.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 280 Score = 58.5 bits (140), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 206 HLAQRLSLAEIAAQSGLSRAHFSRAFKQSFGLSPHAWLQQQRIALACRLLHEGGKSMTTI 265 H + +SL E+A +G+ R R F++ +G++PHA +I A R L + G S Sbjct: 192 HCRRSVSLDELAEVAGMGRYQLIRQFRRRYGMTPHALQLDMKIRQA-RTLLQQGASAADA 250 Query: 266 ALECGFSDQSHFSRVFKQVQGMGPAAWLRR 295 A + GF+DQSHF R FK P + RR Sbjct: 251 AYDTGFADQSHFHRAFKSRVAATPLQYTRR 280 >gi|300309514|ref|YP_003773606.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 323 Score = 55.5 bits (132), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 50/93 (53%) Query: 203 MLSHLAQRLSLAEIAAQSGLSRAHFSRAFKQSFGLSPHAWLQQQRIALACRLLHEGGKSM 262 ML A+ SL +AA +SRA F R F + +P L Q R+A A RLL ++ Sbjct: 222 MLKAPAEDWSLPRLAALCHMSRATFIRRFAEVGASTPAQVLMQLRMAQAARLLSYSKQAT 281 Query: 263 TTIALECGFSDQSHFSRVFKQVQGMGPAAWLRR 295 I G+ ++ F+RVF++ GMGP A+ R+ Sbjct: 282 AQIGEAVGYQSEAAFNRVFRKYSGMGPGAYRRQ 314 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.132 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 874,805 Number of extensions: 31907 Number of successful extensions: 202 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 202 Number of HSP's successfully gapped: 9 Length of query: 297 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 212 Effective length of database: 1,217,395 Effective search space: 258087740 Effective search space used: 258087740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)