BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0202.p (206 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313791|ref|YP_003777883.1| response regulator protein [Her... 416 e-118 gi|300310669|ref|YP_003774761.1| two component response regulato... 146 1e-36 gi|300310176|ref|YP_003774268.1| C4-dicarboxylate transport tran... 128 3e-31 gi|300313031|ref|YP_003777123.1| two component response regulato... 99 3e-22 gi|300311885|ref|YP_003775977.1| LuxR family two component respo... 84 1e-17 >gi|300313791|ref|YP_003777883.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 206 Score = 416 bits (1070), Expect = e-118, Method: Compositional matrix adjust. Identities = 206/206 (100%), Positives = 206/206 (100%) Query: 1 MERTVFVVDDDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSD 60 MERTVFVVDDDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSD Sbjct: 1 MERTVFVVDDDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSD 60 Query: 61 GFEVVRRLERRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEALQI 120 GFEVVRRLERRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEALQI Sbjct: 61 GFEVVRRLERRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEALQI 120 Query: 121 AERQLQSRTEHAACTSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVM 180 AERQLQSRTEHAACTSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVM Sbjct: 121 AERQLQSRTEHAACTSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVM 180 Query: 181 DKMQTKTLADLVRAAERLQISSARQR 206 DKMQTKTLADLVRAAERLQISSARQR Sbjct: 181 DKMQTKTLADLVRAAERLQISSARQR 206 >gi|300310669|ref|YP_003774761.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 214 Score = 146 bits (368), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 81/189 (42%), Positives = 115/189 (60%) Query: 5 VFVVDDDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSDGFEV 64 V++VDDD VRT+L LL+S F + FL+A CL+LD++MP GF++ Sbjct: 9 VYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMPEISGFQL 68 Query: 65 VRRLERRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEALQIAERQ 124 RL+ G IPVIF+SG+G IP +V+A+ GA +FL KP +++L ++ L+ Sbjct: 69 QDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMTLKHVAGN 128 Query: 125 LQSRTEHAACTSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVMDKMQ 184 +Q+RT +RL+TLT RERE+LE I G +K IA EL IS TV VH+ V DK+ Sbjct: 129 MQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRASVKDKLG 188 Query: 185 TKTLADLVR 193 ++ A LVR Sbjct: 189 CQSTATLVR 197 >gi|300310176|ref|YP_003774268.1| C4-dicarboxylate transport transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 196 Score = 128 bits (322), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/197 (41%), Positives = 110/197 (55%), Gaps = 17/197 (8%) Query: 7 VVDDDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPC------CLLLDMKMPGSD 60 +VDD+ ++R +L L S AA + S L A L A P CLLLD++MPG+ Sbjct: 4 IVDDEEIIRDSLAWLARSRNIAATAYDSGPTLLAA-LAASPGIDAEGECLLLDVRMPGTS 62 Query: 61 GFEVVRRLERRG--DAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEAL 118 G + L+ +G PVIF++G+G +P V +K GA +F KP D +L+ V EAL Sbjct: 63 GVALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLEAL 122 Query: 119 QIAERQLQSRTEHA--ACTSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHK 176 SR A A SRL L+ REREVL+L + G +NK IA ELGIS TV+VH+ Sbjct: 123 A------SSRAGGAEDAVQSRLAALSVREREVLDLILAGKMNKVIADELGISMRTVEVHR 176 Query: 177 RRVMDKMQTKTLADLVR 193 + DKM KT +L R Sbjct: 177 AHIFDKMNVKTAVELAR 193 >gi|300313031|ref|YP_003777123.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 195 Score = 98.6 bits (244), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/196 (38%), Positives = 104/196 (53%), Gaps = 13/196 (6%) Query: 6 FVVDDDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSDGFEVV 65 +V D+ + L RLL AG+ SAD+FL+ P L+L + M D ++ Sbjct: 8 HIVGGDDSLGGPLGRLLEEAGFHVAHHRSADQFLEHATATGPGGLVLAVNMRNMDAPQLR 67 Query: 66 RRLERRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEAL----QIA 121 L+ + + IP+I I+G P ++ A + +P ++L+ A EAL + A Sbjct: 68 SLLDEKKEGIPLIVITG--NQPGAAPLGQSSAQQ---EPEVAQQLVAAFREALMPYDESA 122 Query: 122 ERQLQSRTEHAACTSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVMD 181 Q Q R A RL TLT REREVL L + G LNKQIA ELG SE TVK H+++VM Sbjct: 123 PHQQQRRIHQA----RLATLTRREREVLMLLVKGRLNKQIAAELGTSERTVKAHRQQVMR 178 Query: 182 KMQTKTLADLVRAAER 197 KM +LA+LV A R Sbjct: 179 KMYAGSLAELVAAMTR 194 >gi|300311885|ref|YP_003775977.1| LuxR family two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 83.6 bits (205), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 110/209 (52%), Gaps = 11/209 (5%) Query: 5 VFVVDDDNMVRTALLRLL-ASAGYAAHGFASADEFLQARLPAV-PCCLLLDMKMPGSDGF 62 + + DD +VR+ + LL A G G AS + +P + P +LLD+ M G +G Sbjct: 5 IMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMNGL 64 Query: 63 EVVRRLERRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTK---PIQDERLLGAVEEALQ 119 E +RRL I + +S YG+ +QA+ AGA+ +L K + E+ L V+ Q Sbjct: 65 EALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHGRQ 124 Query: 120 -----IAERQLQSRTEHAACT-SRLETLTPREREVLELAIGGLLNKQIATELGISEITVK 173 I+ L + + A + +E LTPR+RE+L+L G K+IA +L +S T++ Sbjct: 125 YLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKTIE 184 Query: 174 VHKRRVMDKMQTKTLADLVRAAERLQISS 202 H+ ++M+++ + + LVR A R I++ Sbjct: 185 THRAQLMERLDIRDVPGLVRYAIRTGIAT 213 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.134 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 590,947 Number of extensions: 23541 Number of successful extensions: 245 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 255 Number of HSP's successfully gapped: 29 Length of query: 206 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 125 Effective length of database: 1,236,335 Effective search space: 154541875 Effective search space used: 154541875 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)