BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0198.p
         (219 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313787|ref|YP_003777879.1| HAD-superfamily hydrolase [Herb...   443   e-126
gi|300309498|ref|YP_003773590.1| sugar transferase [Herbaspirill...    65   5e-12
gi|300313180|ref|YP_003777272.1| phosphoglycolate phosphatase [H...    62   5e-11

>gi|300313787|ref|YP_003777879.1| HAD-superfamily hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score =  443 bits (1139), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/219 (100%), Positives = 219/219 (100%)

Query: 1   MPITHFLFDLDGTLMDSDALHHAAFNTILARWDRHIDVEYYKTHIMGASNAMIFGHLFPG 60
           MPITHFLFDLDGTLMDSDALHHAAFNTILARWDRHIDVEYYKTHIMGASNAMIFGHLFPG
Sbjct: 60  MPITHFLFDLDGTLMDSDALHHAAFNTILARWDRHIDVEYYKTHIMGASNAMIFGHLFPG 119

Query: 61  MPAEQYLPLAEEKESLFRSQLDQRVEPTPGIERLLEHIRRIGGRSAVVTNAPRANAELML 120
           MPAEQYLPLAEEKESLFRSQLDQRVEPTPGIERLLEHIRRIGGRSAVVTNAPRANAELML
Sbjct: 120 MPAEQYLPLAEEKESLFRSQLDQRVEPTPGIERLLEHIRRIGGRSAVVTNAPRANAELML 179

Query: 121 KATGLAGQFDTLVIGDELARAKPDPLPYLTGLQLLGGEAGAAVAFEDSSSGVKAASSAGI 180
           KATGLAGQFDTLVIGDELARAKPDPLPYLTGLQLLGGEAGAAVAFEDSSSGVKAASSAGI
Sbjct: 180 KATGLAGQFDTLVIGDELARAKPDPLPYLTGLQLLGGEAGAAVAFEDSSSGVKAASSAGI 239

Query: 181 WTFGMLGGLDEARLRAAGAHAVIRDFNAAALWDKLGEQA 219
           WTFGMLGGLDEARLRAAGAHAVIRDFNAAALWDKLGEQA
Sbjct: 240 WTFGMLGGLDEARLRAAGAHAVIRDFNAAALWDKLGEQA 278


>gi|300309498|ref|YP_003773590.1| sugar transferase [Herbaspirillum
           seropedicae SmR1]
          Length = 215

 Score = 64.7 bits (156), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 8/182 (4%)

Query: 7   LFDLDGTLMDSDALHHAAFNTILARWDRHIDVEYYKTHIMGASNAMIFGHLFPGMPAEQY 66
           +FD DGTL+DS+ +   A++  +A +   +  E       G S +    H+       Q 
Sbjct: 12  IFDCDGTLVDSEVVAARAWSEYVATYGVQLTPEDALARFRGVSMSWCIAHV--AQLRGQA 69

Query: 67  LPLAEEKESLFR--SQLDQRVEPTPGIERLLEHIRRIGGRSAVVTNAPRANAELMLKATG 124
           LP   E+E   R    L+Q ++P  G    LE + ++    A+ +NAP    EL L+ TG
Sbjct: 70  LPAHFEQELRARMGVMLEQHLQPINGA---LEMVEQLQIPFALASNAPHHKIELCLRVTG 126

Query: 125 LAGQFDTLVIGD-ELARAKPDPLPYLTGLQLLGGEAGAAVAFEDSSSGVKAASSAGIWTF 183
           L   F   +    ++ R KPDP  +L   + LG         EDS  GV+A  +AG+   
Sbjct: 127 LLPHFHGRIFSAYDVQRWKPDPALFLFAAERLGVPPARCAVVEDSLPGVQAGLAAGMKVI 186

Query: 184 GM 185
            +
Sbjct: 187 AL 188


>gi|300313180|ref|YP_003777272.1| phosphoglycolate phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 226

 Score = 61.6 bits (148), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 81/198 (40%), Gaps = 33/198 (16%)

Query: 7   LFDLDGTLMDSDALHHAAFNTILARWDRHIDVEYYKTHI----MGASN------------ 50
           + DLDGT++D+ A  H A N +  R D  +     +T +     G  N            
Sbjct: 11  IIDLDGTMLDTAADFHVAVNRM--RDDLGLTPLSQETIVNFVGKGTENLIRRVLAVDYAE 68

Query: 51  ---AMIFGHLFPGMPAEQYLPLAEEKESLFRSQLDQRVEPTPGIERLLEHIRRIGGRSAV 107
              A  F         E YL +  +  SL+           PG+   L+ +R  G R A 
Sbjct: 69  DEAAQYFQQALAAC-TEHYLAINGDYSSLY-----------PGVLEGLQALRNKGLRLAC 116

Query: 108 VTNAPRANAELMLKATGLAGQFDTLVIGDELARAKPDPLPYLTGLQLLGGEAGAAVAFED 167
           VTN P A A  +L+  GL   F+ +  GD   + KPDP+P L   Q         VA  D
Sbjct: 117 VTNKPLAFAVPLLQKKGLRDFFEIVYGGDSFPKKKPDPMPLLQVCQDFALAPAQVVAIGD 176

Query: 168 SSSGVKAASSAGIWTFGM 185
           SS+  +AA +AG     +
Sbjct: 177 SSNDAQAARAAGCRVLNV 194


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 651,622
Number of extensions: 24051
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 3
Length of query: 219
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,231,600
Effective search space: 168729200
Effective search space used: 168729200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)