BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0191.p
         (385 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313783|ref|YP_003777875.1| D-alanyl-D-alanine carboxypepti...   772   0.0  
gi|300310973|ref|YP_003775065.1| D-alanyl-D-alanine-endopeptidas...   214   1e-56

>gi|300313783|ref|YP_003777875.1| D-alanyl-D-alanine
           carboxypeptidase [Herbaspirillum seropedicae SmR1]
          Length = 385

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/385 (99%), Positives = 383/385 (99%)

Query: 1   MLSTLRPPYGHATPLFLSLLRRAGAVARLMMCSLLVLMLATLAGKFSEAQAAGSSAGKHR 60
           MLSTLRPPYGHATPLFLSLLRRAGAVARLMMCSLLVLMLATLAGKFSEAQAAGSSAGKHR
Sbjct: 1   MLSTLRPPYGHATPLFLSLLRRAGAVARLMMCSLLVLMLATLAGKFSEAQAAGSSAGKHR 60

Query: 61  SAATGAKGRKRTVRKKASADKPARTARSRRALRCPAAAAAVAGTAATAATPATATPASAP 120
           SAATGAKGRKRTVRKKASADKPARTARSRRALR PAAAAAVAGTAATAAT ATATPASAP
Sbjct: 61  SAATGAKGRKRTVRKKASADKPARTARSRRALRRPAAAAAVAGTAATAATAATATPASAP 120

Query: 121 ASGKPELLARCGFTEASRRHIFSRGVYVLDEQTGTPLFERNADTVAPIASVTKLMTAIVW 180
           ASGKPELLARCGFTEASRRHIFSRGVYVLDEQTGTPLFERNADTVAPIASVTKLMTAIVW
Sbjct: 121 ASGKPELLARCGFTEASRRHIFSRGVYVLDEQTGTPLFERNADTVAPIASVTKLMTAIVW 180

Query: 181 LDQKQLAMGNRLEVTEDDLDTLKFTHSRLGVGASLSRADMLHIALMSSENRAAAALSRDF 240
           LDQKQLAMGNRLEVTEDDLDTLKFTHSRLGVGASLSRADMLHIALMSSENRAAAALSRD+
Sbjct: 181 LDQKQLAMGNRLEVTEDDLDTLKFTHSRLGVGASLSRADMLHIALMSSENRAAAALSRDY 240

Query: 241 PGGRPAFIAAMNARAQALGMSHTHFENATGLSPENVSTPRELAALVQAANRYQLIRNDSL 300
           PGGRPAFIAAMNARAQALGMSHTHFENATGLSPENVSTPRELAALVQAANRYQLIRNDSL
Sbjct: 241 PGGRPAFIAAMNARAQALGMSHTHFENATGLSPENVSTPRELAALVQAANRYQLIRNDSL 300

Query: 301 DKQKMINIGRGQLQYINSNRLIRYGQVNASVQKTGFINESGHNMVLRMLVHDRRPVIVTM 360
           DKQKMINIGRGQLQYINSNRLIRYGQVNASVQKTGFINESGHNMVLRMLVHDRRPVIVTM
Sbjct: 301 DKQKMINIGRGQLQYINSNRLIRYGQVNASVQKTGFINESGHNMVLRMLVHDRRPVIVTM 360

Query: 361 LGSGSADGSRLDGVRIAKWLNCSLN 385
           LGSGSADGSRLDGVRIAKWLNCSLN
Sbjct: 361 LGSGSADGSRLDGVRIAKWLNCSLN 385


>gi|300310973|ref|YP_003775065.1| D-alanyl-D-alanine-endopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 366

 Score =  214 bits (545), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 116/233 (49%), Positives = 158/233 (67%), Gaps = 2/233 (0%)

Query: 148 VLDEQTGTPLFERNADTVAPIASVTKLMTAIVWLDQKQLAMGNRLEVTEDDLDTLKFTHS 207
           V+D+     LFE+N+    PIASVTKLMTA+V ++ +Q  M   L VT+DD+D  K + S
Sbjct: 117 VIDQANSQVLFEKNSGVALPIASVTKLMTALVVVEARQ-NMEEVLTVTDDDVDREKHSSS 175

Query: 208 RLGVGASLSRADMLHIALMSSENRAAAALSRDFPGGRPAFIAAMNARAQALGMSHTHFEN 267
           RL VGA+LSR DMLHIALMSSENRAA+AL R++PGG PAF+AAMNA+A++LGM  T + +
Sbjct: 176 RLRVGATLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDTRYVD 235

Query: 268 ATGLSPENVSTPRELAALVQAANRYQLIRNDSLDKQKMINIGRGQLQYINSNRLIRYGQV 327
           +TGLS +NV++ R+LA LV AA  Y +IR  S D + M+      LQY +SNRL    + 
Sbjct: 236 STGLSSQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHALQYNSSNRLTSNKEW 295

Query: 328 NASVQKTGFINESGHNMVLRMLVHDRRPVIVTMLGSGSADGSRLDGVRIAKWL 380
           +  +QKTGFINE+GH +V+   + + RP+++  L S        D  R+ KWL
Sbjct: 296 DIGLQKTGFINEAGHCLVMYTRI-EGRPIVMVFLDSKGRLSHVGDAARMRKWL 347


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.129    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,039,144
Number of extensions: 38290
Number of successful extensions: 179
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 3
Length of query: 385
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 298
Effective length of database: 1,207,925
Effective search space: 359961650
Effective search space used: 359961650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)