BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0174.p
         (102 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313767|ref|YP_003777859.1| hypothetical protein Hsero_4485...   146   3e-37
gi|300312973|ref|YP_003777065.1| hypothetical protein Hsero_3679...    63   5e-12

>gi|300313767|ref|YP_003777859.1| hypothetical protein Hsero_4485
           [Herbaspirillum seropedicae SmR1]
          Length = 102

 Score =  146 bits (369), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/102 (97%), Positives = 99/102 (97%)

Query: 1   MIFSVVLTYLRPIEEVNQHLATHKAWLADNLRQGRILLAGPLAAGGGGLVLAACADEAEL 60
           MIFSVVLTYLRPIEEVNQHL THKAWLADNLRQGRILLAGPLAAGGGGLVLAACADEAEL
Sbjct: 1   MIFSVVLTYLRPIEEVNQHLDTHKAWLADNLRQGRILLAGPLAAGGGGLVLAACADEAEL 60

Query: 61  AAMMALDCFIAQGVARYTAHACEPALAAAAFPAQWAPSARFI 102
           A MMA DCFIAQGVARYTAHACEPALAAAAFPAQWAPSARFI
Sbjct: 61  AVMMAQDCFIAQGVARYTAHACEPALAAAAFPAQWAPSARFI 102


>gi|300312973|ref|YP_003777065.1| hypothetical protein Hsero_3679
          [Herbaspirillum seropedicae SmR1]
          Length = 100

 Score = 62.8 bits (151), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%)

Query: 2  IFSVVLTYLRPIEEVNQHLATHKAWLADNLRQGRILLAGPLAAGGGGLVLAACADEAELA 61
          +F V +TY +P  +++  L  HK +L     +G  L++G      GG+++A CAD AE+ 
Sbjct: 1  MFIVSITYTKPAGDIDALLTAHKKFLNQQYAEGVFLMSGRKVPRTGGIIIADCADRAEIE 60

Query: 62 AMMALDCFIAQGVARYTAHACEPALAAAAFPA 93
          A+M  D F   GVA Y      P++ A A  A
Sbjct: 61 AIMESDPFFIGGVAEYEIIEFVPSMTAEALEA 92


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 143,424
Number of extensions: 2192
Number of successful extensions: 13
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 2
Length of query: 102
Length of database: 1,619,870
Length adjustment: 71
Effective length of query: 31
Effective length of database: 1,283,685
Effective search space: 39794235
Effective search space used: 39794235
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 123 (52.0 bits)