BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0173.p
         (274 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313766|ref|YP_003777858.1| alpha/beta hydrolase superfamil...   503   e-144
gi|300313655|ref|YP_003777747.1| signal peptide protein [Herbasp...   178   5e-46

>gi|300313766|ref|YP_003777858.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score =  503 bits (1294), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/251 (100%), Positives = 251/251 (100%)

Query: 24  MLFLIPLSCAAQNMMNDKHNAIDIVLVHGAFADGSSWSQVIALLQQKGYRVTAVQNPLSS 83
           MLFLIPLSCAAQNMMNDKHNAIDIVLVHGAFADGSSWSQVIALLQQKGYRVTAVQNPLSS
Sbjct: 1   MLFLIPLSCAAQNMMNDKHNAIDIVLVHGAFADGSSWSQVIALLQQKGYRVTAVQNPLSS 60

Query: 84  LADDVSATRRVIDRQPHEVLLVGHSWGGAVITAAGNASKVRGLVYLSALAPDSGQSVAQM 143
           LADDVSATRRVIDRQPHEVLLVGHSWGGAVITAAGNASKVRGLVYLSALAPDSGQSVAQM
Sbjct: 61  LADDVSATRRVIDRQPHEVLLVGHSWGGAVITAAGNASKVRGLVYLSALAPDSGQSVAQM 120

Query: 144 LQRLHAPMSGMQPDADGLIWLDDAAAYAQVMAGDVSPEQVRHLAAVQQPIAAAAFGEPLV 203
           LQRLHAPMSGMQPDADGLIWLDDAAAYAQVMAGDVSPEQVRHLAAVQQPIAAAAFGEPLV
Sbjct: 121 LQRLHAPMSGMQPDADGLIWLDDAAAYAQVMAGDVSPEQVRHLAAVQQPIAAAAFGEPLV 180

Query: 204 HAAWRDKPSWYLITEGDQALPTAVQRKLATLLGARTRQLISSHMSLVSHPQVVADFIEQA 263
           HAAWRDKPSWYLITEGDQALPTAVQRKLATLLGARTRQLISSHMSLVSHPQVVADFIEQA
Sbjct: 181 HAAWRDKPSWYLITEGDQALPTAVQRKLATLLGARTRQLISSHMSLVSHPQVVADFIEQA 240

Query: 264 AQAIQAQDPSP 274
           AQAIQAQDPSP
Sbjct: 241 AQAIQAQDPSP 251


>gi|300313655|ref|YP_003777747.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 261

 Score =  178 bits (451), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 109/222 (49%), Positives = 146/222 (65%), Gaps = 3/222 (1%)

Query: 47  IVLVHGAFADGSSWSQVIALLQQKGYRVTAVQNPLSSLADDVSATRRVIDRQPHEVLLVG 106
           +V+VHGAFADGS W++VI LLQ KG +VTAVQNPL+SLADDV+A RR ID QP +V+LVG
Sbjct: 39  VVIVHGAFADGSDWAKVIPLLQAKGVKVTAVQNPLTSLADDVAAARRAIDNQPGKVVLVG 98

Query: 107 HSWGGAVITAAGNASKVRGLVYLSALAPDSGQSVAQMLQRLHAP--MSGMQPDADGLIWL 164
           HSWGG VIT AGN  KV  LVY++A APD+GQ+   + + L  P  ++ +  D  G   L
Sbjct: 99  HSWGGTVITEAGNHDKVASLVYVAAFAPDAGQATGDLGKDLPVPPGIAKLSVDKAGFASL 158

Query: 165 DDAAAYAQVMAGDVSPEQVRHLAAVQQPIAAAAFGEPLVHAAWRDKPSWYLITEGDQALP 224
             AA  A   A DV  +Q   +AA Q PIA  AFG+ +  AAW+ +PSWY+++  D+ + 
Sbjct: 159 PPAALAAD-FAQDVPAKQAAVMAATQGPIAMKAFGDKVETAAWKTRPSWYIVSTKDRMIQ 217

Query: 225 TAVQRKLATLLGARTRQLISSHMSLVSHPQVVADFIEQAAQA 266
            A++R  A  + A+T +L +SH+   S P  VA  I +A  A
Sbjct: 218 PALERAFAKQINAKTTELPASHVPQQSRPADVAKVILEAVAA 259


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.130    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 782,484
Number of extensions: 29436
Number of successful extensions: 166
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 3
Length of query: 274
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 190
Effective length of database: 1,222,130
Effective search space: 232204700
Effective search space used: 232204700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)