BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0172.p (832 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313765|ref|YP_003777857.1| TonB-dependent siderophore rece... 1674 0.0 gi|300311652|ref|YP_003775744.1| TonB-dependent siderophore rece... 93 8e-20 gi|300313794|ref|YP_003777886.1| ferrichrome-iron receptor prote... 83 1e-16 gi|300309379|ref|YP_003773471.1| TonB-dependent ferric sideropho... 70 1e-12 gi|300312129|ref|YP_003776221.1| TonB-dependent ferric sideropho... 65 2e-11 >gi|300313765|ref|YP_003777857.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 832 Score = 1674 bits (4336), Expect = 0.0, Method: Compositional matrix adjust. Identities = 825/832 (99%), Positives = 826/832 (99%) Query: 1 MHPHHKPPRILLKRPALSIALSCALATLASPQAVLAQAPASANAVQAYAIAAGPLARALS 60 MHPHHKPPRILLKRPALSIALSCALATLASPQAVLAQAPASANAVQAY IAAGPLARALS Sbjct: 1 MHPHHKPPRILLKRPALSIALSCALATLASPQAVLAQAPASANAVQAYTIAAGPLARALS 60 Query: 61 SFAAQAGVALSFDASLLAGKTSPGLSGNYGVEEGFARLLAGSGLQAQRLADGAYTVRPAA 120 SFAAQAGVALSFDASLLAGKTSPGLSGNYGVEEGFARLLAGSGLQAQRLADGAYTVRPAA Sbjct: 61 SFAAQAGVALSFDASLLAGKTSPGLSGNYGVEEGFARLLAGSGLQAQRLADGAYTVRPAA 120 Query: 121 AAAGATAAAAHAARSEAAAPALQAIEVNAQRTSSPLVRPTRQSNTVERQELEALRQGSDS 180 AA GATAA AHAARSEAAAPALQAIEVNAQRTSSPLVRPTRQSNTVERQELEALRQGSDS Sbjct: 121 AATGATAATAHAARSEAAAPALQAIEVNAQRTSSPLVRPTRQSNTVERQELEALRQGSDS 180 Query: 181 LATVLSKIVPGMADSSHTITDYGQTLRGRNMLVLVDGIPLNTNRDSARNMATLNMSSIDK 240 LATVLSKIVPGMADSSHTITDYGQTLRGRNMLVLVDGIPLNTNRDSARNMATLNMSSIDK Sbjct: 181 LATVLSKIVPGMADSSHTITDYGQTLRGRNMLVLVDGIPLNTNRDSARNMATLNMSSIDK 240 Query: 241 VEVLRGSSAIYGAGAAGGIIAVTTRPAGGEPYAETSFSMRSSLSHLGSDGLGGEVTHFMS 300 VEVLRGSSAIYGAGAAGGIIAVTTRPAGGEPY ETSFSMRSSLSHLGSDGLGGEVTHFMS Sbjct: 241 VEVLRGSSAIYGAGAAGGIIAVTTRPAGGEPYVETSFSMRSSLSHLGSDGLGGEVTHFMS 300 Query: 301 GSSGAVDYAVNLGLQHLGGSFDGKGNRLAPEPSQGDLFDSNNYTVGGKLGLRIDRDQRLQ 360 GSSGAVDYAVNLGLQHLGGSFDGKGNRLAPEPSQGDLFDSNNYTVGGKLGLRIDRDQRLQ Sbjct: 301 GSSGAVDYAVNLGLQHLGGSFDGKGNRLAPEPSQGDLFDSNNYTVGGKLGLRIDRDQRLQ 360 Query: 361 FSASRYVAEQDSRYGSDPSVARLPAGSTVARPLEGLQLADQNQIRNTLLGLDYQNKDVLG 420 FSASRYVAEQDSRYGSDPSVARLPAGSTVARPLEGLQLADQNQIRNTLLGLDYQNKDVLG Sbjct: 361 FSASRYVAEQDSRYGSDPSVARLPAGSTVARPLEGLQLADQNQIRNTLLGLDYQNKDVLG 420 Query: 421 SSLSTQLYYRDYFTRFTPFDARAVATRGNNVDQVMQNSKVLGARATVDTPLSERSSLLWG 480 SSLSTQLYYRDYFTRFTPFDARAVATRGNNVDQVMQNSKVLGARATVDTPLSERSSLLWG Sbjct: 421 SSLSTQLYYRDYFTRFTPFDARAVATRGNNVDQVMQNSKVLGARATVDTPLSERSSLLWG 480 Query: 481 MDFNQERSDMPDDIFSPSAYDASGGLVFQRTGTLMYMPPLTTRTVGVFGQLRHKFNQQWA 540 MDFNQERSDMPDDIFSP+AYDASGGLVFQRTGTLMYMPPLTTRTVGVFGQLRHKFNQQWA Sbjct: 481 MDFNQERSDMPDDIFSPNAYDASGGLVFQRTGTLMYMPPLTTRTVGVFGQLRHKFNQQWA 540 Query: 541 VEGGLRYERARASYDDFVPLSQSRAATPRAVRGGAVSYDAWLGNLGAVFKPVNGHEFYAS 600 VEGGLRYERARASYDDFVPLSQSRAA PRAVRGGAVSYDAWLGNLGAVFKPVNGHEFYAS Sbjct: 541 VEGGLRYERARASYDDFVPLSQSRAANPRAVRGGAVSYDAWLGNLGAVFKPVNGHEFYAS 600 Query: 601 FSQGFQLPDIGVQIRNATPAFDINSSALEPVKTNNYELGWRGAFGDVVGTAALFYTTSRL 660 FSQGFQLPDIGVQIRNATPAFDINSSALEPVKTNNYELGWRGAFGDVVGTAALFYTTSRL Sbjct: 601 FSQGFQLPDIGVQIRNATPAFDINSSALEPVKTNNYELGWRGAFGDVVGTAALFYTTSRL 660 Query: 661 GDVQSFNNGLILTRTEEKIRGIEASADYLPDDSAWGGGGTFTMMWGRETPQGSNRDQIMT 720 GDVQSFNNGLILTRTEEKIRGIEASADYLPDDSAWGGGGTFTMMWGRETPQGSNRDQIMT Sbjct: 661 GDVQSFNNGLILTRTEEKIRGIEASADYLPDDSAWGGGGTFTMMWGRETPQGSNRDQIMT 720 Query: 721 GYRIPPMKLTAYLQYKPGSRWSNRLQASYYAARDYRLNGQTSFGRREVGSYTTLDLVSRY 780 GYRIPPMKLTAYLQYKPGS WSNRLQASYYAARDYRLNGQTSFGRREVGSYTTLDLVSRY Sbjct: 721 GYRIPPMKLTAYLQYKPGSHWSNRLQASYYAARDYRLNGQTSFGRREVGSYTTLDLVSRY 780 Query: 781 QLTPKDTVTLGIENLLNRYYLPAYSQLMRNSNNTSRLPATGAVLNLSYSHRW 832 QLTPKDTVTLGIENLLNRYYLPAYSQLMRNSNNTSRLPATGAVLNLSYSHRW Sbjct: 781 QLTPKDTVTLGIENLLNRYYLPAYSQLMRNSNNTSRLPATGAVLNLSYSHRW 832 >gi|300311652|ref|YP_003775744.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 832 Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 83/259 (32%), Positives = 127/259 (49%), Gaps = 33/259 (12%) Query: 34 VLAQAPASANAVQAYAIAAGPLARALSSFAAQAGVALSFDASLLAGKTSPGLSGNYGVEE 93 V+ QA + A + + +AAGPL AL+ FA QAG+ +S+ ++L+ G+ L G Y V + Sbjct: 57 VVTQAQGAPEARRHFNVAAGPLEDALNRFARQAGITMSYASALVQGRQVTALQGEYSVSQ 116 Query: 94 GFARLLAGSGLQAQRLADGAYTVRPAAAAAGATAAAAH--------AARSE--AAAPALQ 143 G LLAGSGL+A R +GAY ++P A H R E AA P Sbjct: 117 GLEVLLAGSGLRAVRSDNGAYALQPLVQGAPEQVDTLHRLGNITVSGRRDEPGAADPVEG 176 Query: 144 AIEV---NAQRTSSPLVRPTRQSNTVERQELEALRQGSDSLATVLSKIVPGMADSSHTIT 200 + + A +T +PL+ + + V R E+EA +G++S+ VL + +PG +H + Sbjct: 177 YVALRSATATKTDTPLLELAQSVSVVTRAEMEA--RGANSILDVL-RYMPGANTETHGVD 233 Query: 201 DYGQ---TLRG-------RNMLVLVDGIPLNTNRDSARNMATLNMSSIDKVEVLRGS-SA 249 G LRG N L + IP S M +++VEVLRG+ SA Sbjct: 234 PRGYDYFNLRGFINAQTTSNYLNGLRQIP------SGFGMFRTETYGLERVEVLRGANSA 287 Query: 250 IYGAGAAGGIIAVTTRPAG 268 +G GG++ ++ AG Sbjct: 288 SFGQADPGGVVNRVSKLAG 306 >gi|300313794|ref|YP_003777886.1| ferrichrome-iron receptor protein [Herbaspirillum seropedicae SmR1] Length = 817 Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 89/283 (31%), Positives = 138/283 (48%), Gaps = 46/283 (16%) Query: 33 AVLAQAPASANAVQA-YAIAAGPLARALSSFAAQAGVALSFDASLLAGKTSPGLSGNYGV 91 A++ A A AVQ + I GPL + L+ FA A V L+ + L G+ SPGL+G+Y V Sbjct: 28 ALMVTAALHAQAVQQRFDIPPGPLEQVLARFAQAADVPLALQSGKLQGQHSPGLAGSYSV 87 Query: 92 EEGFARLLAGSGLQAQRLADGAYTVRPAAAAAGATAAAAHAARSEAAAPALQAIEVNAQ- 150 + GF LLAGSG + + A G Y + PA+ AA +AA + AA+ +L AI+++A Sbjct: 88 QAGFDALLAGSGYRIGKTASG-YVLVPASEAATPSAAT-----TPAASGSLPAIQISASA 141 Query: 151 ----------------RTSSPLVRPTRQSNTVERQELEAL--RQGSDSLA-TVLSKIVPG 191 +T++PL+ + + V + + A+ D+L T I P Sbjct: 142 DPGEQRWTARDSASTTKTATPLIEVPQSISVVTAERIAAMGATTARDALGYTPGVNISPY 201 Query: 192 MADSSHTITDYGQTLRGRNML---VLVDGIPLNTNRDSARNMATLNMSSIDKVEVLRG-S 247 +DS + + LRG + +DG+PL N +S T N I+++ VLRG + Sbjct: 202 GSDSRYDWIN----LRGFDAYSPGFYLDGLPLR-NANSFAVWRTENY-GIEQLAVLRGPA 255 Query: 248 SAIYGAGAAGGIIAVTTR-PAGGEPYAETSFSMRSSLSHLGSD 289 S +YG GG++ V ++ P+ P R LGSD Sbjct: 256 SVLYGQAGPGGVVNVVSKLPSADAP--------RELQVQLGSD 290 >gi|300309379|ref|YP_003773471.1| TonB-dependent ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 790 Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/98 (46%), Positives = 60/98 (61%), Gaps = 3/98 (3%) Query: 28 LASPQAVLAQAPASANAVQAYAIAAGPLARALSSFAAQAGVALSFDASLLAGKTSPGLSG 87 LA +V AQA A+ ++YAI AG L AL+ F +AG+ LSF AG S GL+G Sbjct: 18 LALSGSVTAQAQAT---WRSYAIPAGKLEDALARFGQEAGLLLSFRPEQTAGMHSEGLAG 74 Query: 88 NYGVEEGFARLLAGSGLQAQRLADGAYTVRPAAAAAGA 125 Y E+G A LLAG+GLQA R A+G+Y ++P A A Sbjct: 75 QYESEQGLAALLAGTGLQAIRQANGSYLLKPVDTLASA 112 >gi|300312129|ref|YP_003776221.1| TonB-dependent ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 796 Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 139/297 (46%), Gaps = 33/297 (11%) Query: 20 ALSCALATLASPQAVLAQAPASANAVQAYAIAAGPLARALSSFAAQAGVALSFDASLLAG 79 + ALAT+ S + A A + A Q+Y + +GPL + L A Q+G+ +S++ +L+ Sbjct: 15 VIVVALATMTSLSVPVTSAYAQSAAAQSYHLPSGPLDQTLLRIAQQSGLLISYEPALVKS 74 Query: 80 KTSPGLSGNYGVEEGFARLLAGSGLQAQRLADGAYTVRPAAAAA--GATAAAAHAARSEA 137 S + GN+ E + L+ +GL+ G +T+RP A A+ T AH A ++A Sbjct: 75 LQSAPVEGNFTAPEAIKKALSNTGLELVATPSGKWTLRPVAGASTTSTTETPAHKAIADA 134 Query: 138 AAPALQAIEVNAQRTSSPLVRPTRQSNTVERQELEALRQGSDSLATVLSKIVPGMADSSH 197 P L ++ A + V S T R + L + S++ + + ++ + S+ Sbjct: 135 ELP-LISVAATADSGGTGFV--AESSATFSRTD-TPLSETPKSVSVINAAVI--QSQSAQ 188 Query: 198 TITD--------------YGQ---TLRGR--NMLVLVDGIPLNTNRDSARNMATLNMS-S 237 T++D YG +RG N V+ DG+ ++ SA + A L + + Sbjct: 189 TLSDVLRNASGVVARPGPYGVPSFAIRGYVGNAPVMSDGL---SSYGSAASPAALTPTIA 245 Query: 238 IDKVEVLRGSSAIYGAGA-AGGIIAVTTRPAGGEPYAETSFSMRS-SLSHLGSDGLG 292 I VEV++G SAI A A GG++ V + EP+ E + S S S + D G Sbjct: 246 IAGVEVVKGPSAIMAADAPPGGVVNVIKKAPQVEPFHEVQVAYGSNSFSQVAFDSTG 302 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.131 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,369,548 Number of extensions: 94181 Number of successful extensions: 357 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 357 Number of HSP's successfully gapped: 7 Length of query: 832 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 739 Effective length of database: 1,179,515 Effective search space: 871661585 Effective search space used: 871661585 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)