BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0167.p
         (235 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313760|ref|YP_003777852.1| hypothetical protein Hsero_4478...   473   e-135
gi|300312640|ref|YP_003776732.1| hypothetical protein Hsero_3343...   219   2e-58
gi|300313845|ref|YP_003777937.1| hypothetical protein Hsero_4563...   154   6e-39

>gi|300313760|ref|YP_003777852.1| hypothetical protein Hsero_4478
           [Herbaspirillum seropedicae SmR1]
          Length = 235

 Score =  473 bits (1217), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 231/235 (98%), Positives = 232/235 (98%)

Query: 1   MKKISISPNRRRFLRGALTAAPVAALVVTAGSLTAKAEGPSSGQPYQPSFFNRDEFALLS 60
           MKKISISP+RRRFLRGALTAAPVAAL VTAGSLTAKAEGPS  QPYQPSFFNRDEFALLS
Sbjct: 1   MKKISISPDRRRFLRGALTAAPVAALAVTAGSLTAKAEGPSPDQPYQPSFFNRDEFALLS 60

Query: 61  ALADTLIPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPYP 120
           ALADTLIPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPYP
Sbjct: 61  ALADTLIPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPYP 120

Query: 121 PRELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMAEFEKGEQGSLKMATIPPSALFNL 180
           PRELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMAEFEKGEQGSLKMATIPPSALFNL
Sbjct: 121 PRELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMAEFEKGEQGSLKMATIPPSALFNL 180

Query: 181 LLQNVHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVDQYGKSYPLPPISRG 235
           LLQNVHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVDQYGKSYPLPPISRG
Sbjct: 181 LLQNVHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVDQYGKSYPLPPISRG 235


>gi|300312640|ref|YP_003776732.1| hypothetical protein Hsero_3343
           [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score =  219 bits (557), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/230 (47%), Positives = 142/230 (61%), Gaps = 9/230 (3%)

Query: 10  RRRFLRGALTAAPVAALV----VTAGSLTAKAEGPSSGQP--YQPSFFNRDEFALLSALA 63
           RRRFLR  L   P A+ +      A S  A A+    G+P  Y P++F   E+A L+A  
Sbjct: 8   RRRFLRQVLAIVPAASTLGGATTVAVSQAAMADSSEPGKPRAYTPTYFTAAEWAFLNAAV 67

Query: 64  DTLIPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPYPPRE 123
           D LIP+D  G GAL+ GVPEFID QM TPYG G+LWYMQGPF PD+ PE GYQL   PR+
Sbjct: 68  DHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQLSLVPRD 127

Query: 124 LYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMAEFEKGEQGSLKMATIPPSALFNLLLQ 183
           +Y++G+A  +    + +G  + EL+   + K +   +  + G +   T+P    FN +L 
Sbjct: 128 IYRQGIAACNDWCSKNHGKVFAELD---KAKQLEVLKMMDGGKISFETVPAKTFFNFMLG 184

Query: 184 NVHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVDQYGKSYPLPPIS 233
           N  EGYF DP  GGN+ MG WKM+GFPGARAD+ DWVDQY   YP  P+S
Sbjct: 185 NTKEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVS 234


>gi|300313845|ref|YP_003777937.1| hypothetical protein Hsero_4563
           [Herbaspirillum seropedicae SmR1]
          Length = 237

 Score =  154 bits (389), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 78/192 (40%), Positives = 114/192 (59%), Gaps = 4/192 (2%)

Query: 44  QPYQPSFFNRDEFALLSALADTLIPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQG 103
           Q Y+P FFN  ++  + A  D LIPA+  GPGAL+  VP FID Q++   G G   Y QG
Sbjct: 42  QHYKPVFFNPAQWLFILAACDRLIPAEGRGPGALETNVPVFIDQQLHA--GLGSDIYQQG 99

Query: 104 PFTPDAPPEFGYQLPYPPRELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMAEFEKG- 162
           P  PDAP   G+Q+PY P+++Y+ G+       +QQ+G  + +L+ + ++ ++   +K  
Sbjct: 100 PHQPDAPATLGFQIPYAPQDVYRIGITLTQQISQQQHGKPFEQLDAKDKDALLTALQKNG 159

Query: 163 -EQGSLKMATIPPSALFNLLLQNVHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVD 221
            +  +L   ++ PS  F  LL +   GY  DP  GGN+ M +W  IGFPGARA Y +WVD
Sbjct: 160 VDFAALGEKSMRPSQFFGQLLGDTKNGYLADPMYGGNKDMKAWVAIGFPGARAAYTEWVD 219

Query: 222 QYGKSYPLPPIS 233
           Q+   YPL P+S
Sbjct: 220 QHNVKYPLGPVS 231


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 828,413
Number of extensions: 37758
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 3
Length of query: 235
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 153
Effective length of database: 1,231,600
Effective search space: 188434800
Effective search space used: 188434800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)