BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0160.p
         (243 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313755|ref|YP_003777847.1| hypothetical protein Hsero_4473...   506   e-145
gi|300313754|ref|YP_003777846.1| hypothetical protein Hsero_4472...   107   1e-24

>gi|300313755|ref|YP_003777847.1| hypothetical protein Hsero_4473
           [Herbaspirillum seropedicae SmR1]
          Length = 243

 Score =  506 bits (1302), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 241/243 (99%), Positives = 243/243 (100%)

Query: 1   MSKDPLALQARLYEEVLPGGGHTSFILKRGQSLRITDIEGSANVSMMMLNAQQPSERLNL 60
           MSKDPLALQARLYEEVLPGGGHTSFILKRGQSLRITDIEGSANVSMMMLNAQQPSERLNL
Sbjct: 1   MSKDPLALQARLYEEVLPGGGHTSFILKRGQSLRITDIEGSANVSMMMLNAQQPSERLNL 60

Query: 61  PDTLKGQHTARLQAGHCLYSDMGRVLAAITEDTCGWHDSFGGVLNAEEVREKYGQGRYQE 120
           PDTLKGQHTARLQAGHCLYSDMGRVLAAIT+DTCGWHDSFGGVLNAEEVREKYGQGRYQE
Sbjct: 61  PDTLKGQHTARLQAGHCLYSDMGRVLAAITDDTCGWHDSFGGVLNAEEVREKYGQGRYQE 120

Query: 121 LRNGFYRNGVDNLLVEMGKWNLDLQDLLMVVNLFSRVEVDAEGVFHFVPGNSKAGDYLEL 180
           LRNGFYRNGVDNLLVEMGKWNLDLQDLLMVVNLFSRVEVDAEGVFHFVPGNSK+GDYLEL
Sbjct: 121 LRNGFYRNGVDNLLVEMGKWNLDLQDLLMVVNLFSRVEVDAEGVFHFVPGNSKSGDYLEL 180

Query: 181 AAPMDTLIILTALQHPMDPHPHYAPRPVRLEWLQTHSDDSTHACRHARPENARAFHNTER 240
           AAPMDTLIILTALQHPMDPHPHYAPRPVRLEWLQTHSDDSTHACRHARPENARAFHNTER
Sbjct: 181 AAPMDTLIILTALQHPMDPHPHYAPRPVRLEWLQTHSDDSTHACRHARPENARAFHNTER 240

Query: 241 FHL 243
           FHL
Sbjct: 241 FHL 243


>gi|300313754|ref|YP_003777846.1| hypothetical protein Hsero_4472
           [Herbaspirillum seropedicae SmR1]
          Length = 211

 Score =  107 bits (266), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 97/195 (49%), Gaps = 7/195 (3%)

Query: 12  LYEEVLPGGGHTSFILKRGQSLRITDIEGSANVSMMMLNAQQPSERLNLPDTLKGQHTAR 71
           ++  V+P G    F L  GQ++R+ D+EG+  +  +  +A  P ER +   TL+ Q+ A 
Sbjct: 14  VFRHVIPAGEPYLFNLSAGQTVRLLDLEGNQAIDTLFYSAANPRERYDPQRTLRRQNRAY 73

Query: 72  LQAGHCLYSDMGRVLAAITEDTCGWHDSFGGVLNAEEVREKYGQGRYQELRNGFYRNGVD 131
           L AG  LYS++GR LA I  DTCG HD+ GG    E    +Y       L   +  +  D
Sbjct: 74  LGAGSVLYSNLGRALATIVADTCGRHDTLGGACAQESNTVRYA------LEKRYMHSCRD 127

Query: 132 NLLVE-MGKWNLDLQDLLMVVNLFSRVEVDAEGVFHFVPGNSKAGDYLELAAPMDTLIIL 190
           N L   +    L+ +D+   +N F  V V  EG   F  G S AG Y+EL A  D ++++
Sbjct: 128 NFLCACLHDGRLNKRDIGANINFFMNVPVTPEGGLTFEDGISAAGKYVELCAEQDLIVLI 187

Query: 191 TALQHPMDPHPHYAP 205
           +      +P   + P
Sbjct: 188 SNCPQLNNPCNGWNP 202


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 810,541
Number of extensions: 33455
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 2
Length of query: 243
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,226,865
Effective search space: 196298400
Effective search space used: 196298400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)