BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0153.p (1233 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313748|ref|YP_003777840.1| hemagglutinin-related protein [... 1922 0.0 >gi|300313748|ref|YP_003777840.1| hemagglutinin-related protein [Herbaspirillum seropedicae SmR1] Length = 1113 Score = 1922 bits (4980), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1080/1098 (98%), Positives = 1086/1098 (98%) Query: 136 AGSGTVSFMDGAVTLGTVAVSSYAASLNISTLAPGSHALTAIFDGDATSSAPLTVTVAAA 195 AGSGTVSFMDGAVTLGTVAVSSYAASLNISTLAPGSHALTAIFDGDATSSAPLTVTVAAA Sbjct: 16 AGSGTVSFMDGAVTLGTVAVSSYAASLNISTLAPGSHALTAIFDGDATSSAPLTVTVAAA 75 Query: 196 TPTLSLGSSASAISYGGHLLFNAALSNGYAPSGSIEFHEGGAVLGAATLSGNTATLSLGN 255 TPTLSLGSSASAISYGGHLLFNAALSNGYAPSGSIEFHEGGAVLGAATLSGNTATLSLGN Sbjct: 76 TPTLSLGSSASAISYGGHLLFNAALSNGYAPSGSIEFHEGGAVLGAATLSGNTATLSLGN 135 Query: 256 LTAGAHLITASYAGDGNNAAASSAALTVSVSPLSPTLSVSTSSNAIVYGATPTVTATLNG 315 LTAGAHLITASYAGDGNNAAASSAALTVSVSPLSPTLSVSTSSNAIVYGATPTVTATLNG Sbjct: 136 LTAGAHLITASYAGDGNNAAASSAALTVSVSPLSPTLSVSTSSNAIVYGATPTVTATLNG 195 Query: 316 GLSPGGTILFKDGSATIGTIALSGNSATLPLPGLSVGSHAISAVYSGDSNHNSATASATT 375 GLSPGGTILFKDGSATIGTIALSGNSA+LPLPGLSVGSHAISAVYSGDSNHNSATASATT Sbjct: 196 GLSPGGTILFKDGSATIGTIALSGNSASLPLPGLSVGSHAISAVYSGDSNHNSATASATT 255 Query: 376 LTVGQVSSTVVLNASASNTAFGIPVTLTATVGGSLPSGTVTFTDGGVVLGSAIVSGGVAV 435 LTVGQVSSTVVLNAS SNTAFG PVTLTATVGGSLPSGTV+FTDGGVVLGSAIVSGGVAV Sbjct: 256 LTVGQVSSTVVLNASTSNTAFGTPVTLTATVGGSLPSGTVSFTDGGVVLGSAIVSGGVAV 315 Query: 436 FSTRTLVIGTHSLEAQYGGDSNNAAASSAVATVTVTPRTPALTLSASSTSVSYGATLTLN 495 FSTRTLVIGTHSLEAQYGGDSNNAAASSAVATVTVTPRTPALTLSASSTSVSYGATL LN Sbjct: 316 FSTRTLVIGTHSLEAQYGGDSNNAAASSAVATVTVTPRTPALTLSASSTSVSYGATLILN 375 Query: 496 ATLTGGAAATGLVRFTEGGVTLGATSLSAGAASLSLGKLAPGAHIIRASYAGDSNHAAAT 555 ATLTGGAAATGLVRFTEGGVTLGATSL AGAASLSLG+LAPGAHIIRASYAGDSNHAAAT Sbjct: 376 ATLTGGAAATGLVRFTEGGVTLGATSLLAGAASLSLGRLAPGAHIIRASYAGDSNHAAAT 435 Query: 556 SSAITVTINKVAATVTLSATPASASLGSNVTFNAVISGSSGSLPGGSVVFSEGGTTLATV 615 SSAITVTINKVAATVTLSATPASASLGSNVTFNAVISGSSGSLPGGSVVF EGGTTLATV Sbjct: 436 SSAITVTINKVAATVTLSATPASASLGSNVTFNAVISGSSGSLPGGSVVFREGGTTLATV 495 Query: 616 NVVAGAASFSMSTLALGSHTITAHYSGDSNNASANSSGVVVGIGRSTPTLSLASSASALN 675 NVVAGAASFSMSTLALGSHTITAHYSGDSNNASANSSGVVVGIGRSTPTLSLASSASALN Sbjct: 496 NVVAGAASFSMSTLALGSHTITAHYSGDSNNASANSSGVVVGIGRSTPTLSLASSASALN 555 Query: 676 EQAPLTLTATVAGGIAPTGTVSFMDGAAILGTVSLSGQRASLTLNTLTVGSHRLSAVYNG 735 EQAPLTLTATVAGGIAPTGTVSFMDGAAILGTVSLSGQRASLTLNTLT+GSH LSAVYNG Sbjct: 556 EQAPLTLTATVAGGIAPTGTVSFMDGAAILGTVSLSGQRASLTLNTLTLGSHHLSAVYNG 615 Query: 736 DSNNNSTRSTSVSVAVLSIRPAVTGVTPASGSALGNTRVSISGLRLAGASAVSFGGSAAR 795 DSNNNSTRSTSVSVAVLSIRPAVTGVTPASGSALGNTRVSISGLRLAGASAVSFGGSAA Sbjct: 616 DSNNNSTRSTSVSVAVLSIRPAVTGVTPASGSALGNTRVSISGLRLAGASAVSFGGSAAP 675 Query: 796 IVSSSETELVVLTSAHTAGTVDLVVTAASGTVTVAGGFSYATLADPASSTAVSAMVRAQT 855 IVSSSETELVVLTSAHTAGTVDLVVTAASGTVTVAGGFSYATLADPASSTAVSAMVRAQT Sbjct: 676 IVSSSETELVVLTSAHTAGTVDLVVTAASGTVTVAGGFSYATLADPASSTAVSAMVRAQT 735 Query: 856 QAVQRFATAHLANFTQRLEALHGEGAAPSSFGLSFGQTNDPRREPTTWARGGDIVNYRDS 915 QAVQRFATAHLANFTQRLEALHGEGAAPSSFGLSFGQTNDPRREP+TWARGGDIVNYRDS Sbjct: 736 QAVQRFATAHLANFTQRLEALHGEGAAPSSFGLSFGQTNDPRREPSTWARGGDIVNYRDS 795 Query: 916 ELAYLRAGLRNTALAASSTASTSGADDQLPELPQVSEAASRGDIAWWISGALDLVNQKDS 975 ELAYLRAGLRNTALAASSTASTSGADDQLPELPQVSEA SRGDIAWWISGALDLVNQKDS Sbjct: 796 ELAYLRAGLRNTALAASSTASTSGADDQLPELPQVSEAVSRGDIAWWISGALDLVNQKDS 855 Query: 976 AGQSSARLATSGVSAGGDYRISRTLTLGMGAGYSLSTYRADDDSASSRGQGVMGVLYAST 1035 AGQSSARLATSGVS GGDYRISRTLTLGMGAGYSLSTYRADDDSASSR QGVMGVLYAST Sbjct: 856 AGQSSARLATSGVSVGGDYRISRTLTLGMGAGYSLSTYRADDDSASSRSQGVMGVLYAST 915 Query: 1036 RPADDLYVDVLAGYGVLRFDLSRFIADTGVLAAGSRTGRQVFASTTMGYEWRGQDWLVSP 1095 RPADDLYVDVLAGYGVLRFDLSR+IADTGVLAAGSRTGRQVFASTTMGYEWRGQDWLVSP Sbjct: 916 RPADDLYVDVLAGYGVLRFDLSRYIADTGVLAAGSRTGRQVFASTTMGYEWRGQDWLVSP 975 Query: 1096 YVRLDLARATLDRYSESGGAGALSYFSQPLRNDAAYLGMRAQFDVTLPVGLLTPQARVAY 1155 YVRLDLARATLDRYSESGGAGALSYFSQ LRNDAAYLGMRAQFDVTLPVGLLTPQARVAY Sbjct: 976 YVRLDLARATLDRYSESGGAGALSYFSQSLRNDAAYLGMRAQFDVTLPVGLLTPQARVAY 1035 Query: 1156 QRSLQGAGTATMRYADPSLSSPLYSYSDGVQDSRQWLLTLGGRLLLKNGLALMLLYAHNA 1215 QRSLQ AGTATMRYADPSLSSPLYSYSDGVQDSRQWLLTLGGRLLLKNGLALMLLYAHNA Sbjct: 1036 QRSLQAAGTATMRYADPSLSSPLYSYSDGVQDSRQWLLTLGGRLLLKNGLALMLLYAHNA 1095 Query: 1216 ANAMTTSQSLNFQVSGRF 1233 ANAMTTSQSLNFQVSGRF Sbjct: 1096 ANAMTTSQSLNFQVSGRF 1113 Score = 298 bits (764), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 228/571 (39%), Positives = 353/571 (61%), Gaps = 11/571 (1%) Query: 95 SSKWTVTAVAPTPTSISLGSSSTSPAYGAALTLTANLAGTYAGSGTVSFMDGAVTLGTVA 154 S+ TVT A TPT +SLGSS+++ +YG L A L+ YA SG++ F +G LG Sbjct: 65 SAPLTVTVAAATPT-LSLGSSASAISYGGHLLFNAALSNGYAPSGSIEFHEGGAVLGAAT 123 Query: 155 VSSYAASLNISTLAPGSHALTAIFDGD----ATSSAPLTVTVAAATPTLSLGSSASAISY 210 +S A+L++ L G+H +TA + GD A SSA LTV+V+ +PTLS+ +S++AI Y Sbjct: 124 LSGNTATLSLGNLTAGAHLITASYAGDGNNAAASSAALTVSVSPLSPTLSVSTSSNAIVY 183 Query: 211 GGHLLFNAALSNGYAPSGSIEFHEGGAVLGAATLSGNTATLSLGNLTAGAHLITASYAGD 270 G A L+ G +P G+I F +G A +G LSGN+A+L L L+ G+H I+A Y+GD Sbjct: 184 GATPTVTATLNGGLSPGGTILFKDGSATIGTIALSGNSASLPLPGLSVGSHAISAVYSGD 243 Query: 271 GNNAAASSAALTVSVSPLSPTLSVSTSSNAIVYGATPTVTATLNGGLSPGGTILFKDGSA 330 N+ +A+++A T++V +S T+ ++ S++ +G T+TAT+ G L P GT+ F DG Sbjct: 244 SNHNSATASATTLTVGQVSSTVVLNASTSNTAFGTPVTLTATVGGSL-PSGTVSFTDGGV 302 Query: 331 TIGTIALSGNSATLPLPGLSVGSHAISAVYSGDSNHNSATASATTLTVGQVSSTVVLNAS 390 +G+ +SG A L +G+H++ A Y GDSN+ +A+++ T+TV + + L+AS Sbjct: 303 VLGSAIVSGGVAVFSTRTLVIGTHSLEAQYGGDSNNAAASSAVATVTVTPRTPALTLSAS 362 Query: 391 ASNTAFGIPVTLTATV-GGSLPSGTVTFTDGGVVLGSAIVSGGVAVFSTRTLVIGTHSLE 449 +++ ++G + L AT+ GG+ +G V FT+GGV LG+ + G A S L G H + Sbjct: 363 STSVSYGATLILNATLTGGAAATGLVRFTEGGVTLGATSLLAGAASLSLGRLAPGAHIIR 422 Query: 450 AQYGGDSNNAAASSAVATVTVTPRTPALTLSASSTSVSYGATLTLNATL--TGGAAATGL 507 A Y GDSN+AAA+S+ TVT+ +TLSA+ S S G+ +T NA + + G+ G Sbjct: 423 ASYAGDSNHAAATSSAITVTINKVAATVTLSATPASASLGSNVTFNAVISGSSGSLPGGS 482 Query: 508 VRFTEGGVTLGATSLSAGAASLSLGKLAPGAHIIRASYAGDSNHAAATSSAITVTINKVA 567 V F EGG TL ++ AGAAS S+ LA G+H I A Y+GDSN+A+A SS + V I + Sbjct: 483 VVFREGGTTLATVNVVAGAASFSMSTLALGSHTITAHYSGDSNNASANSSGVVVGIGRST 542 Query: 568 ATVTLSATPASASLGSNVTFNAVISGSSGSLPGGSVVFSEGGTTLATVNVVAGAASFSMS 627 T++L+++ ++ + + +T A ++G G P G+V F +G L TV++ AS +++ Sbjct: 543 PTLSLASSASALNEQAPLTLTATVAG--GIAPTGTVSFMDGAAILGTVSLSGQRASLTLN 600 Query: 628 TLALGSHTITAHYSGDSNNASANSSGVVVGI 658 TL LGSH ++A Y+GDSNN S S+ V V + Sbjct: 601 TLTLGSHHLSAVYNGDSNNNSTRSTSVSVAV 631 Score = 259 bits (662), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 206/487 (42%), Positives = 305/487 (62%), Gaps = 11/487 (2%) Query: 102 AVAPTPTSISLGSSSTSPAYGAALTLTANLAGTYAGSGTVSFMDGAVTLGTVAVSSYAAS 161 +V+P ++S+ +SS + YGA T+TA L G + GT+ F DG+ T+GT+A+S +AS Sbjct: 164 SVSPLSPTLSVSTSSNAIVYGATPTVTATLNGGLSPGGTILFKDGSATIGTIALSGNSAS 223 Query: 162 LNISTLAPGSHALTAIFDGD-----ATSSAPLTVTVAAATPTLSLGSSASAISYGGHLLF 216 L + L+ GSHA++A++ GD AT+SA T+TV + T+ L +S S ++G + Sbjct: 224 LPLPGLSVGSHAISAVYSGDSNHNSATASAT-TLTVGQVSSTVVLNASTSNTAFGTPVTL 282 Query: 217 NAALSNGYAPSGSIEFHEGGAVLGAATLSGNTATLSLGNLTAGAHLITASYAGDGNNAAA 276 A + G PSG++ F +GG VLG+A +SG A S L G H + A Y GD NNAAA Sbjct: 283 TATV-GGSLPSGTVSFTDGGVVLGSAIVSGGVAVFSTRTLVIGTHSLEAQYGGDSNNAAA 341 Query: 277 SSAALTVSVSPLSPTLSVSTSSNAIVYGATPTVTATLNGGLSPGGTILFKDGSATIGTIA 336 SSA TV+V+P +P L++S SS ++ YGAT + ATL GG + G + F +G T+G + Sbjct: 342 SSAVATVTVTPRTPALTLSASSTSVSYGATLILNATLTGGAAATGLVRFTEGGVTLGATS 401 Query: 337 LSGNSATLPLPGLSVGSHAISAVYSGDSNHNSATASATTLTVGQVSSTVVLNASASNTAF 396 L +A+L L L+ G+H I A Y+GDSNH +AT+SA T+T+ +V++TV L+A+ ++ + Sbjct: 402 LLAGAASLSLGRLAPGAHIIRASYAGDSNHAAATSSAITVTINKVAATVTLSATPASASL 461 Query: 397 GIPVTLTATV---GGSLPSGTVTFTDGGVVLGSAIVSGGVAVFSTRTLVIGTHSLEAQYG 453 G VT A + GSLP G+V F +GG L + V G A FS TL +G+H++ A Y Sbjct: 462 GSNVTFNAVISGSSGSLPGGSVVFREGGTTLATVNVVAGAASFSMSTLALGSHTITAHYS 521 Query: 454 GDSNNAAASSAVATVTVTPRTPALTLSASSTSVSYGATLTLNATLTGGAAATGLVRFTEG 513 GDSNNA+A+S+ V + TP L+L++S+++++ A LTL AT+ GG A TG V F +G Sbjct: 522 GDSNNASANSSGVVVGIGRSTPTLSLASSASALNEQAPLTLTATVAGGIAPTGTVSFMDG 581 Query: 514 GVTLGATSLSAGAASLSLGKLAPGAHIIRASYAGDSNHAAATSSAITVTINKVAATVTLS 573 LG SLS ASL+L L G+H + A Y GDSN+ + S++++V + + VT Sbjct: 582 AAILGTVSLSGQRASLTLNTLTLGSHHLSAVYNGDSNNNSTRSTSVSVAVLSIRPAVT-G 640 Query: 574 ATPASAS 580 TPAS S Sbjct: 641 VTPASGS 647 Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 122/299 (40%), Positives = 191/299 (63%), Gaps = 6/299 (2%) Query: 105 PTPTSISLGSSSTSPAYGAALTLTANLAGTYAGSGTVSFMDGAVTLGTVAVSSYAASLNI 164 P +++L +SSTS +YGA L L A L G A +G V F +G VTLG ++ + AASL++ Sbjct: 352 PRTPALTLSASSTSVSYGATLILNATLTGGAAATGLVRFTEGGVTLGATSLLAGAASLSL 411 Query: 165 STLAPGSHALTAIFDGD----ATSSAPLTVTVAAATPTLSLGSSASAISYGGHLLFNAAL 220 LAPG+H + A + GD A +S+ +TVT+ T++L ++ ++ S G ++ FNA + Sbjct: 412 GRLAPGAHIIRASYAGDSNHAAATSSAITVTINKVAATVTLSATPASASLGSNVTFNAVI 471 Query: 221 --SNGYAPSGSIEFHEGGAVLGAATLSGNTATLSLGNLTAGAHLITASYAGDGNNAAASS 278 S+G P GS+ F EGG L + A+ S+ L G+H ITA Y+GD NNA+A+S Sbjct: 472 SGSSGSLPGGSVVFREGGTTLATVNVVAGAASFSMSTLALGSHTITAHYSGDSNNASANS 531 Query: 279 AALTVSVSPLSPTLSVSTSSNAIVYGATPTVTATLNGGLSPGGTILFKDGSATIGTIALS 338 + + V + +PTLS+++S++A+ A T+TAT+ GG++P GT+ F DG+A +GT++LS Sbjct: 532 SGVVVGIGRSTPTLSLASSASALNEQAPLTLTATVAGGIAPTGTVSFMDGAAILGTVSLS 591 Query: 339 GNSATLPLPGLSVGSHAISAVYSGDSNHNSATASATTLTVGQVSSTVVLNASASNTAFG 397 G A+L L L++GSH +SAVY+GDSN+NS +++ ++ V + V AS +A G Sbjct: 592 GQRASLTLNTLTLGSHHLSAVYNGDSNNNSTRSTSVSVAVLSIRPAVTGVTPASGSALG 650 Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 34/78 (43%), Positives = 53/78 (67%), Gaps = 4/78 (5%) Query: 673 ALNEQAPLTLTATVAGGIAPTGTVSFMDGAAILGTVSLSGQRASLTLNTLTVGSHRLSAV 732 A ++P T A +AG +GTVSFMDGA LGTV++S ASL ++TL GSH L+A+ Sbjct: 2 AQRSRSPPTWQALIAG----SGTVSFMDGAVTLGTVAVSSYAASLNISTLAPGSHALTAI 57 Query: 733 YNGDSNNNSTRSTSVSVA 750 ++GD+ +++ + +V+ A Sbjct: 58 FDGDATSSAPLTVTVAAA 75 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.311 0.125 0.346 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,008,788 Number of extensions: 114357 Number of successful extensions: 503 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 469 Number of HSP's successfully gapped: 9 Length of query: 1233 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1137 Effective length of database: 1,165,310 Effective search space: 1324957470 Effective search space used: 1324957470 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 136 (57.0 bits)