BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0149.p (497 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313925|ref|YP_003778017.1| methyl-accepting chemotaxis sen... 548 e-157 gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis tra... 346 3e-96 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 337 2e-93 gi|300314057|ref|YP_003778149.1| methyl-accepting chemotaxis pro... 305 5e-84 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 304 1e-83 >gi|300313925|ref|YP_003778017.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 522 Score = 548 bits (1413), Expect = e-157, Method: Compositional matrix adjust. Identities = 323/522 (61%), Positives = 395/522 (75%), Gaps = 25/522 (4%) Query: 1 MSFKRLTVLQRLGFGFGGVLLLLLLIILTSLLKMDQIKQQLTSITDVNNVEIVHLAAMRT 60 M F RLTV RL FGFG VL L+LLI+ +L K+ ++ +QL SIT+VNNVEI HL+ MR Sbjct: 1 MDFTRLTVSSRLKFGFGVVLFLILLIVGIALKKLAEVNRQLVSITEVNNVEIYHLSTMRA 60 Query: 61 AVYEQSLVTRNLALASSPAEFSQNTERLKEQISNYAQAESALDKMFTELDETTEMERSAM 120 A YEQSL +R + LA +P + +QN L+ QI Y Q+E+AL K+F +L ETT+ E+ A+ Sbjct: 61 AAYEQSLASRGIGLALTPEDLNQNANNLQRQIGLYTQSEAALAKLFADLQETTDTEKQAL 120 Query: 121 VGIKKQASEVLPSLQKVLELARQGDGQGIKEILAAGLAKQQSQRRAGLAEFSRLEDKLNE 180 I+K ++ + P L +++LA+ + +K I+ L K Q+ RR LAE S EDKLN Sbjct: 121 AAIQKMSAGLSPGLSNMIDLAKAQKTEELKPIMTGPLGKMQADRRKALAELSAFEDKLNN 180 Query: 181 DAKNDAKNVYANARNLVISLGTFALLVGLAGATLITRSILRQLGGEPADAAILASLIAHG 240 +AK++A V A+AR L+I+LG ALL GL A LITRS+LRQLGGEPA A+ LA+ IA G Sbjct: 181 EAKDEALAVSASARKLLIALGVIALLCGLMAAVLITRSVLRQLGGEPAYASRLAAQIAKG 240 Query: 241 DLRAEIATDTRHPDSLMMSMKSMNDGLREIVRAVRAGTDAITTASGEIASGNLDLSSRTE 300 DLR E+ DTRHP+SLMMSMK+MN+GLR IVR VR+GTDAI TAS +IASGNLDLSSRTE Sbjct: 241 DLRTEVKADTRHPESLMMSMKTMNEGLRGIVREVRSGTDAIATASSQIASGNLDLSSRTE 300 Query: 301 EQASSLEETASAMEQLTSTVRQNADRANEANLLAVDASGVAAQSGKLVQEVVTTMGAIDE 360 EQASSLEETASAMEQLT+TV+QNAD A EAN LA +AS VA+QSG+LV+EVVTTM AI++ Sbjct: 301 EQASSLEETASAMEQLTATVKQNADSAGEANRLAAEASAVASQSGQLVKEVVTTMAAIED 360 Query: 361 SSKKIVDIISVID-------------------------GXAVVATEVRSLAQRSSTAAKE 395 SSKKIVDIISVID G AVVA EVR+LAQRSS AA+E Sbjct: 361 SSKKIVDIISVIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSSAAARE 420 Query: 396 IKTLIDDSVLKVSAGSALVNQAGATMSDVVASVNRVVSVIGEISEASGEQSKGIDEINHA 455 IK LIDDSV KV++GSALVN+AG TMSDVV+SV+RVVSVIG IS++S EQSKGI EINHA Sbjct: 421 IKALIDDSVDKVASGSALVNRAGDTMSDVVSSVDRVVSVIGAISDSSAEQSKGIQEINHA 480 Query: 456 ISQMDAVTQQNAALVEQAAAASQALQSQAEKLGKMVEVFVIS 497 ISQMD VTQQNAALVE+AAAASQALQ+QA +L +VEVF ++ Sbjct: 481 ISQMDQVTQQNAALVEEAAAASQALQAQARRLSGVVEVFAVA 522 >gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 547 Score = 346 bits (887), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 228/516 (44%), Positives = 306/516 (59%), Gaps = 25/516 (4%) Query: 6 LTVLQRLGFGFGGVLLLLLLIILTSLLKMDQIKQQLTSITDVNNVEIVHLAAMRTAVYEQ 65 L V+ RL GFG +L+ LL I L M ++ LT ITDVNN EI + A+R A+ ++ Sbjct: 4 LKVVTRLALGFGLILVFLLSISALGLYGMARVNDALTDITDVNNAEIKLVTALRNALSQR 63 Query: 66 SLVTRNLALASSPAEFSQNTERLKEQISNYAQAESALDKMFTELDETTEMERSAMVGIKK 125 +L RN+AL A+ ++ L Q YA A +ALDKMFT TTE ER +V IK Sbjct: 64 ALAIRNIALLDEQADMQVESQTLARQEKLYADAYAALDKMFTTEAATTERERQLLVQIKN 123 Query: 126 QASEVLPSLQKVLELARQGDGQGIKEILAAGLAKQQSQRRAGLAEFSRLEDKLNEDAKND 185 + LP + K ++L + ++L + +Q L E + ED+LN++A Sbjct: 124 DEAATLPLMAKAVQLGLENKAAEAGKMLITQVRPKQQAWIKSLTELAEFEDQLNDEAATS 183 Query: 186 AKNVYANARNLVISLGTFALLVGLAGATLITRSILRQLGGEPADAAILASLIAHGDLRAE 245 A+N YA R + ++ ALLVG+A + LI RSILRQLG EP++A +A IA GDL A Sbjct: 184 ARNTYAWLRMVTVAAALAALLVGVAASALIARSILRQLGAEPSEAQAVARDIASGDLTAT 243 Query: 246 IATDTRHPDSLMMSMKSMNDGLREIVRAVRAGTDAITTASGEIASGNLDLSSRTEEQASS 305 + SLM S++ M L I +++ + I+ ASG+IA GN DLS RTEEQA+S Sbjct: 244 VRVREGDSSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEEQAAS 303 Query: 306 LEETASAMEQLTSTVRQNADRANEANLLAVDASGVAAQSGKLVQEVVTTMGAIDESSKKI 365 LEETA++ME+LT+TVRQN A+EA L+ A+ AA + VV TM I SS K+ Sbjct: 304 LEETAASMEELTTTVRQNTQHASEALRLSGGATETAAAGSQAFDRVVQTMDRITASSSKM 363 Query: 366 VDIISVID-------------------------GXAVVATEVRSLAQRSSTAAKEIKTLI 400 DIISVI+ G AVVA+EVRSLAQRS+ AAKEIK LI Sbjct: 364 SDIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAKEIKELI 423 Query: 401 DDSVLKVSAGSALVNQAGATMSDVVASVNRVVSVIGEISEASGEQSKGIDEINHAISQMD 460 +S+ V AGS LV+ AG M+ +VASV R ++ I+ A+ EQ GI++IN A+ QMD Sbjct: 424 GESMSHVGAGSQLVSDAGQQMAQIVASVQRFGEIMNNIATATQEQGSGIEQINTAMVQMD 483 Query: 461 AVTQQNAALVEQAAAASQALQSQAEKLGKMVEVFVI 496 VTQQNAALVE+A+AA+Q+L QA L K+V VF I Sbjct: 484 QVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKI 519 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 337 bits (863), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 222/509 (43%), Positives = 312/509 (61%), Gaps = 25/509 (4%) Query: 11 RLGFGFGGVLLLLLLIILTSLLKMDQIKQQLTSITDVNNVEIVHLAAMRTAVYEQSLVTR 70 RLG GF V+LLL+L+ + M Q++ + T + +V N E + M V E+S+ R Sbjct: 10 RLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLETVGERSISLR 69 Query: 71 NLALASSPAEFSQNTERLKEQISNYAQAESALDKMFTELDETTEMERSAMVGIKKQASEV 130 NL L ++P + + ++ Q Y A L ++F E +T++ E++A+ I QAS+ Sbjct: 70 NLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALPKIAAQASKA 129 Query: 131 LPSLQKVLELARQGDGQGIKEILAAGLAKQQSQRRAGLAEFSRLEDKLNEDAKNDAKNVY 190 + + +E ++ + + + L Q + L + LED+LN++A + Y Sbjct: 130 EKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQLNKEAAEASAVAY 189 Query: 191 ANARNLVISLGTFALLVGLAGATLITRSILRQLGGEPADAAILASLIAHGDLRAEIATDT 250 + AR L++ + ++ + A +TR +LR+LGGEP A +A IA GDL I T Sbjct: 190 SRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGDLAVVIDTRA 249 Query: 251 RHPDSLMMSMKSMNDGLREIVRAVRAGTDAITTASGEIASGNLDLSSRTEEQASSLEETA 310 DSLM +M+ M D L IV VR G++ ITTAS EIA GNLDLS RTE+QA +LEETA Sbjct: 250 GDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRTEQQAGALEETA 309 Query: 311 SAMEQLTSTVRQNADRANEANLLAVDASGVAAQSGKLVQEVVTTMGAIDESSKKIVDIIS 370 S+MEQL STV+QNA+ A++AN LA+ AS VA Q G +V +VV TM +I+ SS+K+ DI+S Sbjct: 310 SSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQTMQSINASSQKVADIVS 369 Query: 371 VID-------------------------GXAVVATEVRSLAQRSSTAAKEIKTLIDDSVL 405 VID G AVVA+EVRSLAQRS++AAKEIK LI DSV Sbjct: 370 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVG 429 Query: 406 KVSAGSALVNQAGATMSDVVASVNRVVSVIGEISEASGEQSKGIDEINHAISQMDAVTQQ 465 KV GS LV QAG+TM D+V S+ RV V+ EI+ A+ EQS GI+++N AI Q+D +TQQ Sbjct: 430 KVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAIIQIDDMTQQ 489 Query: 466 NAALVEQAAAASQALQSQAEKLGKMVEVF 494 NAALVEQAAAA+++LQ QA L ++V VF Sbjct: 490 NAALVEQAAAAARSLQEQAAGLQQLVSVF 518 >gi|300314057|ref|YP_003778149.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 554 Score = 305 bits (781), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 209/518 (40%), Positives = 300/518 (57%), Gaps = 32/518 (6%) Query: 6 LTVLQRLGFGFGGVLLLLLLIILTSLLKMDQIKQQLTSITDVNNVEIVHLAAMRTAVYEQ 65 L+V RL F VL ++L++ + S+ +++ I LT+++D NNV+ + R +V+++ Sbjct: 11 LSVATRLALSFALVLAMMLVLTVVSISRVNAINDSLTTVSDDNNVKQRYAINFRGSVHDR 70 Query: 66 SLVTRNLALASSPAEFSQNTERLKEQISNYAQAESALDKMFTELDETTEMERSAMVGIKK 125 ++ R+L L E + + + ++Y ++ LD+MF + E ER+++ IK Sbjct: 71 AIALRDLTLVGD-TELKDVSALISKLDADYQRSAKLLDEMFAGMQVRPE-ERASLDSIKA 128 Query: 126 QASEVLPSLQKVLELARQGDGQGIKEILAAGLAKQQSQRRAGLAEFSRLEDKLNEDAKND 185 + +P KV+ GD +G ++++ + A + F +E+ +++ Sbjct: 129 VEARAMPLAAKVIAARSSGDVEGARQLMLSQAKPAFVDWLAAINHFIDMEESMSQAESAK 188 Query: 186 AKNVYANARNLVISLGTFALLVGLAGATLITRSILRQLGGEPADAAILASLIAHGDLRA- 244 A+ V + ++ L AL+ G A LITRSI LG EP + LA + G+L Sbjct: 189 ARTVAREFKAFMLVLLAAALVAGTVLAMLITRSIRGALGAEPDEVKELALAVDRGELYHA 248 Query: 245 ---EIATDTRHPDSLMMSMKSMNDGLREIVRAVRAGTDAITTASGEIASGNLDLSSRTEE 301 +A TR S+M ++ M+ LR V VR D + T S +IA+GN DL++RTE+ Sbjct: 249 AALPLAGKTR-ARSIMATLSEMSGNLRHTVTRVRDAADGVATISSQIAAGNRDLAARTED 307 Query: 302 QASSLEETASAMEQLTSTVRQNADRANEANLLAVDASGVAAQSGKLVQEVVTTMGAIDES 361 QA+SLEETASAMEQLT+TV+QN + A +AN LA +AS +A Q G +V VV TM AI+ S Sbjct: 308 QAASLEETASAMEQLTATVKQNDNHARQANQLAHNASEIARQGGAIVDNVVDTMAAINVS 367 Query: 362 SKKIVDIISVIDG-------------------------XAVVATEVRSLAQRSSTAAKEI 396 S+KIVDII VIDG AVVATEVR+LAQRS+ AAKE+ Sbjct: 368 SRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEV 427 Query: 397 KTLIDDSVLKVSAGSALVNQAGATMSDVVASVNRVVSVIGEISEASGEQSKGIDEINHAI 456 K LIDDSV V G+ LV QAG TM +VASV +V V+GEIS AS EQS GI+E++ AI Sbjct: 428 KQLIDDSVQNVENGTHLVEQAGQTMEQIVASVQQVTDVMGEISSASHEQSLGIEEVHKAI 487 Query: 457 SQMDAVTQQNAALVEQAAAASQALQSQAEKLGKMVEVF 494 + MD VTQ NAALVEQA+AA LQ QA L + V VF Sbjct: 488 ALMDQVTQHNAALVEQASAAVATLQEQAVNLNQAVGVF 525 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 304 bits (778), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 214/519 (41%), Positives = 298/519 (57%), Gaps = 27/519 (5%) Query: 3 FKRLTVLQRLGFGFGGVLLLLLLIILTSLLKMDQIKQQLTSITDVNNVEIVHLAAMRTAV 62 +L V RL GF V++LL++I L L M +K L+ I NN + M +V Sbjct: 1 MNKLKVSTRLALGFASVVVLLVVISLVGLWGMATVKGNLSDIV-ANNQQGGLADVMNNSV 59 Query: 63 YEQSLVTRNLALASSPAEFSQNTERLKEQISNYAQAESALDKMFTELDETTEMERSAMVG 122 ++L RN+AL PA ++ ER+K Q Y A L KMF + D TT E Sbjct: 60 RIRALAIRNIALFQEPALIAREIERIKVQEKAYQDAREKLGKMFDQPD-TTRREHELFDL 118 Query: 123 IKKQASEVLPSLQKVLELARQGDGQGIKEILAAGLAKQQSQRRAGLAEFSRLEDKLNEDA 182 I + A++ P + + + LA+Q + +L + Q++ L E R ED+LN A Sbjct: 119 IAQNAADTEPLMNQAVTLAQQDKSAELISLLTQKIRPVQAKWLDNLDELGRFEDELNNQA 178 Query: 183 KNDAKNVYANARNLVISLGTFALLVGLAGATLITRSILRQLGGEPADAAILASLIAHGDL 242 A Y + +L ++L+ +A A LI RS+L QLGGEPA A LA+ IA G+L Sbjct: 179 SAAADTTYRSILTTTWTLVAGSVLLAVAAAFLIVRSVLHQLGGEPAQAQELAAQIAQGNL 238 Query: 243 RAEIATDTRHPDSLMMSMKSMNDGLREIVRAVRAGTDAITTASGEIASGNLDLSSRTEEQ 302 I SLM S+++M L IV ++ ++I+TA+ +IA GNLDLS RTEEQ Sbjct: 239 AVSIPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEEQ 298 Query: 303 ASSLEETASAMEQLTSTVRQNADRANEANLLAVDASGVAAQSGKLVQEVVTTMGAIDESS 362 A+SLEETAS+ME++TSTV QN A + + LA AS A + G++V+ VV TM I +S+ Sbjct: 299 AASLEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQSA 358 Query: 363 KKIVDIISVID-------------------------GXAVVATEVRSLAQRSSTAAKEIK 397 KI +II+ ++ G AVVATEVRSLAQRS+++AKEI+ Sbjct: 359 YKITEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEIR 418 Query: 398 TLIDDSVLKVSAGSALVNQAGATMSDVVASVNRVVSVIGEISEASGEQSKGIDEINHAIS 457 LI+ SV V AG LV++AG TM +VV S+ +V ++ EI+ AS EQS GI +IN AIS Sbjct: 419 GLIESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAIS 478 Query: 458 QMDAVTQQNAALVEQAAAASQALQSQAEKLGKMVEVFVI 496 QMD VTQQNAALVE++A+A+Q++ QA L V VF I Sbjct: 479 QMDEVTQQNAALVEESASAAQSMAQQANSLRDAVAVFRI 517 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.125 0.312 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,030,128 Number of extensions: 36077 Number of successful extensions: 511 Number of sequences better than 1.0e-08: 67 Number of HSP's gapped: 273 Number of HSP's successfully gapped: 68 Length of query: 497 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 408 Effective length of database: 1,198,455 Effective search space: 488969640 Effective search space used: 488969640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)