BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0140.p
         (445 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313732|ref|YP_003777824.1| L-rhamnose isomerase [Herbaspir...   894   0.0  

>gi|300313732|ref|YP_003777824.1| L-rhamnose isomerase
           [Herbaspirillum seropedicae SmR1]
          Length = 431

 Score =  894 bits (2310), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%)

Query: 15  MSYRIDPQFIAEQNARAHQQLQSDYEALAGVLSRRGCDIEALTGQAQAFAVALPSWGVGT 74
           MSYRIDPQFIAEQNARAHQQLQSDYEALAGVLSRRGCDIEALTGQAQAFAVALPSWGVGT
Sbjct: 1   MSYRIDPQFIAEQNARAHQQLQSDYEALAGVLSRRGCDIEALTGQAQAFAVALPSWGVGT 60

Query: 75  GGTRFARFPGQGEPRNVFDKIDDCGTIHQLTRVTPGVSLHFPWDRTTDARALREAATQHG 134
           GGTRFARFPGQGEPRNVFDKIDDCGTIHQLTRVTPGVSLHFPWDRTTDARALREAATQHG
Sbjct: 61  GGTRFARFPGQGEPRNVFDKIDDCGTIHQLTRVTPGVSLHFPWDRTTDARALREAATQHG 120

Query: 135 LHFDAVNSNTFQDAAGQAHSYKFGSLTALDPEVRAQAVAHNIDCIELGHALGSKGLTVWI 194
           LHFDAVNSNTFQDAAGQAHSYKFGSLTALDPEVRAQAVAHNIDCIELGHALGSKGLTVWI
Sbjct: 121 LHFDAVNSNTFQDAAGQAHSYKFGSLTALDPEVRAQAVAHNIDCIELGHALGSKGLTVWI 180

Query: 195 GDGANFPGQSNLRGALERYLESMRAIYAALPADWLVYIEHKLFEPAFYATTIADWGTSFA 254
           GDGANFPGQSNLRGALERYLESMRAIYAALPADWLVYIEHKLFEPAFYATTIADWGTSFA
Sbjct: 181 GDGANFPGQSNLRGALERYLESMRAIYAALPADWLVYIEHKLFEPAFYATTIADWGTSFA 240

Query: 255 CATELGPKAKCLVDLGHHAPNTNIEMIVARLAQFGKLGGFHFNDSKYGDDDLDSGSINPF 314
           CATELGPKAKCLVDLGHHAPNTNIEMIVARLAQFGKLGGFHFNDSKYGDDDLDSGSINPF
Sbjct: 241 CATELGPKAKCLVDLGHHAPNTNIEMIVARLAQFGKLGGFHFNDSKYGDDDLDSGSINPF 300

Query: 315 QLFLVFNELRDAAQRDGQAFRPAYMLDQSHNVTDPIESLMTSAVEVQRAYLQAALVDTQA 374
           QLFLVFNELRDAAQRDGQAFRPAYMLDQSHNVTDPIESLMTSAVEVQRAYLQAALVDTQA
Sbjct: 301 QLFLVFNELRDAAQRDGQAFRPAYMLDQSHNVTDPIESLMTSAVEVQRAYLQAALVDTQA 360

Query: 375 LSHHQKNNDALMAAQTLKQAFRTDVSAILAMARYRSGGAIDPVALYRASAYRDHKREERP 434
           LSHHQKNNDALMAAQTLKQAFRTDVSAILAMARYRSGGAIDPVALYRASAYRDHKREERP
Sbjct: 361 LSHHQKNNDALMAAQTLKQAFRTDVSAILAMARYRSGGAIDPVALYRASAYRDHKREERP 420

Query: 435 VVAGRSSSGIV 445
           VVAGRSSSGIV
Sbjct: 421 VVAGRSSSGIV 431


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,447,383
Number of extensions: 61902
Number of successful extensions: 162
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 357
Effective length of database: 1,203,190
Effective search space: 429538830
Effective search space used: 429538830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)