BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0138.p
         (267 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313730|ref|YP_003777822.1| DeoR family transcription regul...   549   e-158
gi|300310298|ref|YP_003774390.1| glycerol-3-phosphate regulon re...    86   3e-18

>gi|300313730|ref|YP_003777822.1| DeoR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score =  549 bits (1414), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 267/267 (100%), Positives = 267/267 (100%)

Query: 1   MINHNRRKRLLSLLGEHTALTVEQFCHLLNASAATVRRDIAWLAERDMLTRTRGGAERLA 60
           MINHNRRKRLLSLLGEHTALTVEQFCHLLNASAATVRRDIAWLAERDMLTRTRGGAERLA
Sbjct: 1   MINHNRRKRLLSLLGEHTALTVEQFCHLLNASAATVRRDIAWLAERDMLTRTRGGAERLA 60

Query: 61  QKRSAFALSGETFQASLARQPAQKRAIARHAAEMCDNGETIIINGGTTTFLMAEYLAQKR 120
           QKRSAFALSGETFQASLARQPAQKRAIARHAAEMCDNGETIIINGGTTTFLMAEYLAQKR
Sbjct: 61  QKRSAFALSGETFQASLARQPAQKRAIARHAAEMCDNGETIIINGGTTTFLMAEYLAQKR 120

Query: 121 LKILTNSFLMAERLLTTSENQIIVPGGQIYREQNVILSPFENDITQHHYASKMFMGIYGV 180
           LKILTNSFLMAERLLTTSENQIIVPGGQIYREQNVILSPFENDITQHHYASKMFMGIYGV
Sbjct: 121 LKILTNSFLMAERLLTTSENQIIVPGGQIYREQNVILSPFENDITQHHYASKMFMGIYGV 180

Query: 181 SMLGLMEADPLLIQAEKRLLGQAEQLVVLADSSKFSRKAGLILCGLNRVNCLVTDTGISD 240
           SMLGLMEADPLLIQAEKRLLGQAEQLVVLADSSKFSRKAGLILCGLNRVNCLVTDTGISD
Sbjct: 181 SMLGLMEADPLLIQAEKRLLGQAEQLVVLADSSKFSRKAGLILCGLNRVNCLVTDTGISD 240

Query: 241 AAAQMMEQAGVKVVTVAPEHERLALVG 267
           AAAQMMEQAGVKVVTVAPEHERLALVG
Sbjct: 241 AAAQMMEQAGVKVVTVAPEHERLALVG 267


>gi|300310298|ref|YP_003774390.1| glycerol-3-phosphate regulon
           repressor transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 268

 Score = 85.9 bits (211), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 125/251 (49%), Gaps = 8/251 (3%)

Query: 6   RRKRLLSLLGEHTALTVEQFCHLLNASAATVRRDIAWLAERDMLTRTRGGAERLAQKRSA 65
           R++ LL  + +H  ++VE+    LN +  TVRRD+  + +  +L R  GG   L+   + 
Sbjct: 21  RQQTLLECVRKHGTISVEELAQQLNVTTQTVRRDVKAMVDASLLARYHGGVGLLSSTENI 80

Query: 66  FALSGETFQASLARQPAQKRAIARHAAEMCDNGETIIINGGTTTFLMAEYLAQ-KRLKIL 124
                +   A        KR I R  A    +G ++I+N GTTT  +A  L Q K L ++
Sbjct: 81  AYPQRQVMHAE------AKRRIGRTVAARVPDGCSLILNLGTTTEEVALALQQHKNLHVV 134

Query: 125 TNSFLMAERLLTTSENQIIVPGGQIYREQNVILSPFENDITQHHYASKMFMGIYGVSMLG 184
           TN+  +A  L +    ++I+ GG +      I+     D  +        +GI  + M G
Sbjct: 135 TNNLNVANSLASNPALEVIIAGGVVRARDRGIVGEATIDFIRQFKVDIGIIGISSIEMDG 194

Query: 185 LM-EADPLLIQAEKRLLGQAEQLVVLADSSKFSRKAGLILCGLNRVNCLVTDTGISDAAA 243
           ++ + D   ++  + ++ Q+ Q+ ++AD+SKF R+A + +  L++++ L TD       A
Sbjct: 195 VLRDFDAREVKVAQTIIEQSRQVWLVADASKFGRQALVKMAHLSQIDVLFTDAPPPPELA 254

Query: 244 QMMEQAGVKVV 254
           +++ +  V+VV
Sbjct: 255 KLLAETDVEVV 265


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 708,849
Number of extensions: 25509
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 2
Length of query: 267
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,222,130
Effective search space: 223649790
Effective search space used: 223649790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)