BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0136.p (523 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313728|ref|YP_003777820.1| sugar ABC transporter ATPase [H... 1038 0.0 gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [H... 392 e-110 gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [H... 368 e-103 gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase... 352 5e-98 gi|300310367|ref|YP_003774459.1| sugar ABC transporter ATPase [H... 348 6e-97 >gi|300313728|ref|YP_003777820.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 546 Score = 1038 bits (2685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 518/523 (99%), Positives = 520/523 (99%) Query: 1 MHAVADDSTAPVLSLSGIGKRFQGVVALQDVGFTVRPGEVMALLGENGAGKSTLVKILTG 60 M AVADDSTAPVLSLSGIGKRFQGVVALQDVGFTVRPGEVMALLGENGAGKSTLVKILTG Sbjct: 24 MRAVADDSTAPVLSLSGIGKRFQGVVALQDVGFTVRPGEVMALLGENGAGKSTLVKILTG 83 Query: 61 IHQPDEGSIHLGGREVRFASAQDAMRGGITAVHQETVMFEELSVAENIWIGRQPLCGTPR 120 IHQPDEGSIHLGGREVRFASAQDAMRGGITAVHQETVMFEELSVAENIWIGRQPLCGTPR Sbjct: 84 IHQPDEGSIHLGGREVRFASAQDAMRGGITAVHQETVMFEELSVAENIWIGRQPLCGTPR 143 Query: 121 RIDWRRMEDEARALFARLEVDLPVRARVKDLSVAQRHFVEIARALSQQAQVVIMDEPTAA 180 RIDWRRMEDEARALFARLEVDLPVRARVKDLSVAQRHFVEIARALSQQAQVVIMDEPTAA Sbjct: 144 RIDWRRMEDEARALFARLEVDLPVRARVKDLSVAQRHFVEIARALSQQAQVVIMDEPTAA 203 Query: 181 LSHHEIGELYRIIGQLRRAGTAVIFISHKFDEIYAVADRYTVLRDGRFIASGELADITEQ 240 LSHHEIGELYRIIGQLRRAGTAVIFISHKFDEIYAVADRYTVLRDGRFIASGELADITEQ Sbjct: 204 LSHHEIGELYRIIGQLRRAGTAVIFISHKFDEIYAVADRYTVLRDGRFIASGELADITEQ 263 Query: 241 QLVALMVGREVGQVFSRAASNTGDQTAPVLEVKHLSHPSEFDDVSFAVRPGEILGFYGLV 300 QLVALMVGREVGQVFSRAASNT DQTAPVLEVKHLSHPSEFDDVSFAVRPGEILGFYGLV Sbjct: 264 QLVALMVGREVGQVFSRAASNTEDQTAPVLEVKHLSHPSEFDDVSFAVRPGEILGFYGLV 323 Query: 301 GAGRSEVMHALFGLSPEAQGAVCIDGREVKLCSPAQAIAHGLAYVPEDRQRQGALLSLPI 360 GAGRSEVMHALFGLSPEAQGAV IDGREVKLCSPAQAIAHGLAYVPEDRQRQGALLSLPI Sbjct: 324 GAGRSEVMHALFGLSPEAQGAVWIDGREVKLCSPAQAIAHGLAYVPEDRQRQGALLSLPI 383 Query: 361 FQNITLPVLPGIGFFLRRHRRREIDIARRLCEQLELKASHFHQHVAQLSGGNQQKVVLAK 420 FQNITLPVLPGIGFFLRRHRRREIDIARRLCEQLELKASHFHQHVAQLSGGNQQKVVLAK Sbjct: 384 FQNITLPVLPGIGFFLRRHRRREIDIARRLCEQLELKASHFHQHVAQLSGGNQQKVVLAK 443 Query: 421 WLATQPRVLILDEPTKGIDVGSKAAVHRFIGELVAQGLAVILVSSELPEVMGMSDRIVVM 480 WLATQPRVLILDEPTKGID+GSKAAVHRFIGELVAQGLAVILVSSELPEVMGMSDRIVVM Sbjct: 444 WLATQPRVLILDEPTKGIDIGSKAAVHRFIGELVAQGLAVILVSSELPEVMGMSDRIVVM 503 Query: 481 HQGRVQQVFTRAEASAEALAAAASGGLHADAATATLAGEATWH 523 HQGRVQQVF+RAEASAEALAAAASGGLHADAATATLAGEATWH Sbjct: 504 HQGRVQQVFSRAEASAEALAAAASGGLHADAATATLAGEATWH 546 >gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 392 bits (1008), Expect = e-110, Method: Compositional matrix adjust. Identities = 214/505 (42%), Positives = 314/505 (62%), Gaps = 24/505 (4%) Query: 11 PVLSLSGIGKRFQGVVALQDVGFTVRPGEVMALLGENGAGKSTLVKILTGIHQPDEGSIH 70 PV++L + KRF GV+AL + F + GEV AL+GENGAGKSTL+KIL+G++Q D G I Sbjct: 21 PVIALRNVCKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDIL 80 Query: 71 LGGREVRFASAQDAMRGGITAVHQETVMFEELSVAENIWIGRQPLCGTPRRIDWRRMEDE 130 L G+ V + A GI +HQE + LS A+NI+IGR+P ID + + Sbjct: 81 LDGKPVEITEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKAMGLFIDEDELNRQ 140 Query: 131 ARALFARLEVDLPVRARVKDLSVAQRHFVEIARALSQQAQVVIMDEPTAALSHHEIGELY 190 A A+FAR+ +D+ V +L+VA++ VEIA+ALS ++V+IMDEPTAAL++ EI EL+ Sbjct: 141 AAAIFARMRLDMDPSTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAELF 200 Query: 191 RIIGQLRRAGTAVIFISHKFDEIYAVADRYTVLRDGRFIASGELADITEQQLVALMVGRE 250 RII L+ G +++ISHK DE+ +ADR +V+RDG++IA+ + + + ++++MVGR Sbjct: 201 RIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVPMQETSMDTIISMMVGRA 260 Query: 251 VGQVFSRAASNTGDQTAP--------VLEVKHLSHPSEFDDVSFAVRPGEILGFYGLVGA 302 + G+Q P VLEV+ L+ DVSF +R GEILGF GL+GA Sbjct: 261 L----------DGEQRIPPDTSRNDVVLEVRGLNRGRAIRDVSFTLRKGEILGFAGLMGA 310 Query: 303 GRSEVMHALFGLSPEAQGAVCIDGREVKLCSPAQAIAHGLAYVPEDRQRQGALLSLPIFQ 362 GR+EV A+FG P G + I G + + SPA A+AHG+ Y+ EDR+ G + + + Sbjct: 311 GRTEVARAIFGADPLEAGEIIIHGGKAVIKSPADAVAHGIGYLSEDRKHFGLAVGMDVQA 370 Query: 363 NITLPVL---PGIGFFLRRHRRREIDIARRLCEQLELKASHFHQHVAQLSGGNQQKVVLA 419 NI L + +GF +R R + A+ QL +K Q LSGGNQQK+V+A Sbjct: 371 NIALSSMGRFTRVGFMDQRAIR---EAAQMYVRQLAIKTPSVEQQARLLSGGNQQKIVIA 427 Query: 420 KWLATQPRVLILDEPTKGIDVGSKAAVHRFIGELVAQGLAVILVSSELPEVMGMSDRIVV 479 KWL +L DEPT+GIDVG+K+ +++ + L QG A++++SSELPEV+ MS R++V Sbjct: 428 KWLLRDCDILFFDEPTRGIDVGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRVLV 487 Query: 480 MHQGRVQQVFTRAEASAEALAAAAS 504 M +GR+ RA+A+ E + A+ Sbjct: 488 MCEGRITGELARADATQEKIMQLAT 512 Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 12/229 (5%) Query: 281 FDDVSFAVRPGEILGFYGLVGAGRSEVMHALFGLSPEAQGAVCIDGREVKLCSPAQAIAH 340 D+ F + GE+ G GAG+S +M L G+ G + +DG+ V++ P QA A Sbjct: 38 LDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILLDGKPVEITEPRQAQAL 97 Query: 341 GLAYVPEDRQRQGALLSLPIFQNITLPVLP--GIGFFLRRH--RRREIDIARRLCEQLEL 396 G+ + Q + L QNI + P +G F+ R+ I R+ +L++ Sbjct: 98 GIGII---HQELNLMNHLSAAQNIFIGREPRKAMGLFIDEDELNRQAAAIFARM--RLDM 152 Query: 397 KASHFHQHVAQLSGGNQQKVVLAKWLATQPRVLILDEPTKGIDVGSKAAVHRFIGELVAQ 456 S V +L+ QQ V +AK L+ RVLI+DEPT ++ A + R I +L AQ Sbjct: 153 DPS---TPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAELFRIIRDLQAQ 209 Query: 457 GLAVILVSSELPEVMGMSDRIVVMHQGRVQQVFTRAEASAEALAAAASG 505 G+ ++ +S ++ E+ ++DR+ VM G+ E S + + + G Sbjct: 210 GVGIVYISHKMDELRQIADRVSVMRDGKYIATVPMQETSMDTIISMMVG 258 Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 116/233 (49%), Gaps = 14/233 (6%) Query: 27 ALQDVGFTVRPGEVMALLGENGAGKSTLVKILTGIHQPDEGSIHLGGREVRFASAQDAMR 86 A++DV FT+R GE++ G GAG++ + + + G + G I + G + S DA+ Sbjct: 288 AIRDVSFTLRKGEILGFAGLMGAGRTEVARAIFGADPLEAGEIIIHGGKAVIKSPADAVA 347 Query: 87 GGITAVHQETVMFE---ELSVAENIWI---GRQPLCGTPRRIDWRRMEDEARALFARLEV 140 GI + ++ F + V NI + GR G +D R + + A+ +L + Sbjct: 348 HGIGYLSEDRKHFGLAVGMDVQANIALSSMGRFTRVGF---MDQRAIREAAQMYVRQLAI 404 Query: 141 DLP-VRARVKDLSVAQRHFVEIARALSQQAQVVIMDEPTAALSHHEIGELYRIIGQLRRA 199 P V + + LS + + IA+ L + ++ DEPT + E+Y+++ L Sbjct: 405 KTPSVEQQARLLSGGNQQKIVIAKWLLRDCDILFFDEPTRGIDVGAKSEIYKLLDALAEQ 464 Query: 200 GTAVIFISHKFDEIYAVADRYTVLRDGRFIASGEL--ADITEQQLVALMVGRE 250 G A++ IS + E+ ++ R V+ +GR +GEL AD T+++++ L RE Sbjct: 465 GKAIVMISSELPEVLRMSHRVLVMCEGRI--TGELARADATQEKIMQLATQRE 515 >gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 521 Score = 368 bits (944), Expect = e-103, Method: Compositional matrix adjust. Identities = 205/489 (41%), Positives = 304/489 (62%), Gaps = 22/489 (4%) Query: 8 STAPVLSLSGIGKRFQGVVALQDVGFTVRPGEVMALLGENGAGKSTLVKILTGIHQPDEG 67 + P+L + GI K F +AL D+ T+RPGE+ AL+GENGAGKSTL+K+L+G+H PD+G Sbjct: 2 TQTPLLQMRGIRKSFGATLALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDQG 61 Query: 68 SIHLGGREVRFASAQDAMRGGITAVHQETVMFEELSVAENIWIGRQPLCGTPRRIDWRRM 127 I L GR V + GI ++QE + +SVA N+++G + L ID M Sbjct: 62 EILLDGRPVALRDPGASRAAGINLIYQELAVAPNISVAANVFMGSE-LRTRLGLIDHAAM 120 Query: 128 EDEARALFARLEVDLPVRARVKDLSVAQRHFVEIARALSQQAQVVIMDEPTAALSHHEIG 187 A+ +L LS+A++ VEIARAL ++++VIMDEPTAALS E Sbjct: 121 RSRTDAVLRQLGAGFGASDLAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETE 180 Query: 188 ELYRIIGQLRRAGTAVIFISHKFDEIYAVADRYTVLRDGRFIASGELA--DITEQQLVAL 245 +L+ ++ +LR G A+I+ISH+ E+YA+ADR TVLRDG F+ GEL +I +++V + Sbjct: 181 QLFNVVRRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFV--GELVRDEIDSERIVQM 238 Query: 246 MVGREVGQVFS--RAASNTGDQTAPVLEVKHLSHPSEFDDVSFAVRPGEILGFYGLVGAG 303 MVGR + + + R A Q V++V+ L+ + SF VR GE+LGF GLVGAG Sbjct: 239 MVGRSLSEFYQHQRIAPADAAQLPTVMQVRALAG-GKIRPASFDVRAGEVLGFAGLVGAG 297 Query: 304 RSEVMHALFGLSPEAQGAVCIDGREVKLCSPAQAIAHGLAYVPEDRQRQGALLSLPIFQN 363 R+E+ LFG P + G + ++GR V + P A+ G+AYVPEDR+ QG L + + N Sbjct: 298 RTELARLLFGADPRSGGDILLEGRPVHIDQPRAAMRAGIAYVPEDRKGQGLFLQMAVAAN 357 Query: 364 ITLPVLPGIGFFLRRHRRREI-------DIARRLCEQLELKASHFHQHVAQLSGGNQQKV 416 T+ V RH R + +AR ++L +K +H V +LSGGNQQKV Sbjct: 358 ATMNVAS-------RHTRLGLVRSRSLGGVARAAIQRLNVKVAHPETPVGKLSGGNQQKV 410 Query: 417 VLAKWLATQPRVLILDEPTKGIDVGSKAAVHRFIGELVAQGLAVILVSSELPEVMGMSDR 476 +LA+WL P+VLILDEPT+G+D+ +K+ +++ + L +QG+AV+++SSELPEV+G+ DR Sbjct: 411 LLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLVHRLASQGVAVVVISSELPEVIGICDR 470 Query: 477 IVVMHQGRV 485 ++VM +G + Sbjct: 471 VLVMREGMI 479 Score = 89.0 bits (219), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 114/227 (50%), Gaps = 14/227 (6%) Query: 28 LQDVGFTVRPGEVMALLGENGAGKSTLVKILTGIHQPDEGSIHLGGREVRFASAQDAMRG 87 ++ F VR GEV+ G GAG++ L ++L G G I L GR V + AMR Sbjct: 275 IRPASFDVRAGEVLGFAGLVGAGRTELARLLFGADPRSGGDILLEGRPVHIDQPRAAMRA 334 Query: 88 GITAVHQETV---MFEELSVAENIWIG---RQPLCGTPRRIDWRRMEDEARALFARLEVD 141 GI V ++ +F +++VA N + R G R R + ARA RL V Sbjct: 335 GIAYVPEDRKGQGLFLQMAVAANATMNVASRHTRLGLVR---SRSLGGVARAAIQRLNVK 391 Query: 142 LP-VRARVKDLSVAQRHFVEIARALSQQAQVVIMDEPTAALSHHEIGELYRIIGQLRRAG 200 + V LS + V +AR L +V+I+DEPT + + E+Y+++ +L G Sbjct: 392 VAHPETPVGKLSGGNQQKVLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLVHRLASQG 451 Query: 201 TAVIFISHKFDEIYAVADRYTVLRDGRFIASGELAD--ITEQQLVAL 245 AV+ IS + E+ + DR V+R+G + +GELA IT++ ++ L Sbjct: 452 VAVVVISSELPEVIGICDRVLVMREG--MITGELAGAAITQENIMRL 496 Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 23/226 (10%) Query: 281 FDDVSFAVRPGEILGFYGLVGAGRSEVMHALFGLSPEAQGAVCIDGREVKLCSPAQAIAH 340 D+ +RPGEI G GAG+S +M L G+ QG + +DGR V L P + A Sbjct: 22 LSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDQGEILLDGRPVALRDPGASRAA 81 Query: 341 GLAYVPEDRQRQGALLSLPIFQNITLPVLPGIGFFLRRH---------RRREIDIARRLC 391 G+ + ++ L + NI++ +G LR R R + R+L Sbjct: 82 GINLIYQE---------LAVAPNISVAANVFMGSELRTRLGLIDHAAMRSRTDAVLRQLG 132 Query: 392 EQLELKASHFHQHVAQLSGGNQQKVVLAKWLATQPRVLILDEPTKGIDVGSKAAVHRFIG 451 AS +LS QQ+V +A+ L + R++I+DEPT + + + Sbjct: 133 AGF--GASDL---AGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETEQLFNVVR 187 Query: 452 ELVAQGLAVILVSSELPEVMGMSDRIVVMHQGRVQQVFTRAEASAE 497 L +GLA+I +S + EV ++DR+ V+ G R E +E Sbjct: 188 RLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELVRDEIDSE 233 >gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 352 bits (902), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 209/504 (41%), Positives = 306/504 (60%), Gaps = 17/504 (3%) Query: 12 VLSLSGIGKRFQGVVALQDVGFTVRPGEVMALLGENGAGKSTLVKILTGI--HQPDEGSI 69 +L + GI K F GV AL + +RPGE + L GENGAGKSTL+KIL+G+ H EG I Sbjct: 5 LLEMKGIVKSFGGVRALNGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWEGEI 64 Query: 70 HLGGREVRFASAQDAMRGGITAVHQETVMFEELSVAENIWIGRQ-PLCGTPRRIDWRRME 128 G+ ++ S +D GI +HQE ++ ELSVAENI++G + L G R+++ M Sbjct: 65 LWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGG--RMNYPAMY 122 Query: 129 DEARALFARLEV-DLPVRARVKDLSVAQRHFVEIARALSQQAQVVIMDEPTAALSHHEIG 187 A L L + D+ V V + VEIA+AL++ A+++I+DEP+++L+ EIG Sbjct: 123 RRAEELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASEIG 182 Query: 188 ELYRIIGQLRRAGTAVIFISHKFDEIYAVADRYTVLRDGRFIASGELADITEQQLVALMV 247 L +II L+ G A ++ISHK DE+ V D +V+RDG+ IA+ + ++ +++ MV Sbjct: 183 VLLKIIKDLKARGVACVYISHKLDEVAEVCDTISVIRDGKHIATTPMQEMDVDKIITQMV 242 Query: 248 GREVGQVFSRAASNTGDQTAPVLEVKHLS-----HP--SEFDDVSFAVRPGEILGFYGLV 300 GRE+ ++ G+ VLE ++++ +P DDVSF+VR GEILG GLV Sbjct: 243 GREITAMYPERNHAIGEV---VLEARNITCYDIDNPRRKRVDDVSFSVRRGEILGIAGLV 299 Query: 301 GAGRSEVMHALFG-LSPEAQGAVCIDGREVKLCSPAQAIAHGLAYVPEDRQRQGALLSLP 359 GAGR+E++ A+FG +G V ++G+ SP ++I GL VPEDR+ G + L Sbjct: 300 GAGRTELVSAIFGAYRGRYEGQVLLEGKPADTSSPLKSIRRGLCMVPEDRKHHGIVPDLD 359 Query: 360 IFQNITLPVLPGIGFFLRRHRRREIDIARRLCEQLELKASHFHQHVAQLSGGNQQKVVLA 419 + QNITL VL R E+ + ++ +K + + LSGGNQQK VLA Sbjct: 360 VGQNITLTVLNRFSRGSRIDGSAELKTIQDEIGRMRVKTATPFLPITSLSGGNQQKAVLA 419 Query: 420 KWLATQPRVLILDEPTKGIDVGSKAAVHRFIGELVAQGLAVILVSSELPEVMGMSDRIVV 479 K L QP+VLILDEPT+G+DVG+KA ++R I EL GLA+I+VSSEL EV+G+SDR++V Sbjct: 420 KMLLAQPKVLILDEPTRGVDVGAKAEIYRLISELAKAGLAIIMVSSELAEVLGVSDRVLV 479 Query: 480 MHQGRVQQVFTRAEASAEALAAAA 503 + +GR++ F S E + AAA Sbjct: 480 IGEGRLRGDFVNDNLSQETVLAAA 503 Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 124/241 (51%), Gaps = 11/241 (4%) Query: 28 LQDVGFTVRPGEVMALLGENGAGKSTLVKILTGIHQPD-EGSIHLGGREVRFASAQDAMR 86 + DV F+VR GE++ + G GAG++ LV + G ++ EG + L G+ +S ++R Sbjct: 280 VDDVSFSVRRGEILGIAGLVGAGRTELVSAIFGAYRGRYEGQVLLEGKPADTSSPLKSIR 339 Query: 87 GGITAVHQETV---MFEELSVAENIWIGRQPLCGTPRRID----WRRMEDEARALFARLE 139 G+ V ++ + +L V +NI + RID + ++DE + R++ Sbjct: 340 RGLCMVPEDRKHHGIVPDLDVGQNITLTVLNRFSRGSRIDGSAELKTIQDEIGRM--RVK 397 Query: 140 VDLPVRARVKDLSVAQRHFVEIARALSQQAQVVIMDEPTAALSHHEIGELYRIIGQLRRA 199 P + LS + +A+ L Q +V+I+DEPT + E+YR+I +L +A Sbjct: 398 TATPFLP-ITSLSGGNQQKAVLAKMLLAQPKVLILDEPTRGVDVGAKAEIYRLISELAKA 456 Query: 200 GTAVIFISHKFDEIYAVADRYTVLRDGRFIASGELADITEQQLVALMVGREVGQVFSRAA 259 G A+I +S + E+ V+DR V+ +GR +++++ ++A + + V Q RAA Sbjct: 457 GLAIIMVSSELAEVLGVSDRVLVIGEGRLRGDFVNDNLSQETVLAAAINQPVPQATPRAA 516 Query: 260 S 260 + Sbjct: 517 A 517 >gi|300310367|ref|YP_003774459.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 516 Score = 348 bits (893), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 198/507 (39%), Positives = 307/507 (60%), Gaps = 16/507 (3%) Query: 11 PVLSLSGIGKRFQGVVALQDVGFTVRPGEVMALLGENGAGKSTLVKILTGIHQPDEGSIH 70 P+L LSGI K F GV AL DVG + PGEV L+G+NGAGKSTL+K+LTG+H+PD G I Sbjct: 11 PMLELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDGGKIE 70 Query: 71 LGGREVRFASAQDAMRGGITAVHQETVMFEELSVAENIWIGRQPLCGTPRRIDWRRMEDE 130 L GR + AS +A GI+ V+QE + LSVAENI++GR P RIDW+ + + Sbjct: 71 LDGRAIAPASTLEAQALGISTVYQEVNLCPNLSVAENIFVGRYPT--RFGRIDWKSVHTQ 128 Query: 131 ARALFARLEVDLPVRARVKDLSVAQRHFVEIARALSQQAQVVIMDEPTAALSHHEIGELY 190 +R L +L++D+ V A + +A + V I+RALS A+V+I+DEPT++L E+ +L+ Sbjct: 129 SRQLLQQLQIDIDVAAPLSSYPLAIQQMVAISRALSVSAKVLILDEPTSSLDEAEVQQLF 188 Query: 191 RIIGQLRRAGTAVIFISHKFDEIYAVADRYTVLRDGRFIASGE--LADITEQQLVALMVG 248 +++ +LR G A++F++H D+ Y ++DR TVLR+G + GE +++++ LV MVG Sbjct: 189 KVLRRLREQGMAILFVTHFLDQTYEISDRITVLRNG--VREGEYLVSELSRLDLVNKMVG 246 Query: 249 ------REVGQ----VFSRAASNTGDQTAPVLEVKHLSHPSEFDDVSFAVRPGEILGFYG 298 R+V + S +++ A L+ + +R GE+ G G Sbjct: 247 VTAVDHRKVEAGAEALASELSTDAAAAGAVFLQAEGFGRRGVLAPQDLQLRRGEVFGLCG 306 Query: 299 LVGAGRSEVMHALFGLSPEAQGAVCIDGREVKLCSPAQAIAHGLAYVPEDRQRQGALLSL 358 L+G+GR+E+ LFG G + I+G+EV+L P AIA G+ + EDR+++GA+L L Sbjct: 307 LLGSGRTEMARLLFGADRADCGQLRIEGKEVRLNVPRDAIAAGIGFCSEDRKKEGAILEL 366 Query: 359 PIFQNITLPVLPGIGFFLRRHRRREIDIARRLCEQLELKASHFHQHVAQLSGGNQQKVVL 418 + +NI L + G F R+R+ IA + L +K + + LSGGNQQK +L Sbjct: 367 SVRENIILALQARQGLFRVLPRKRQNQIAADYVKWLGIKTADLETPIGLLSGGNQQKALL 426 Query: 419 AKWLATQPRVLILDEPTKGIDVGSKAAVHRFIGELVAQGLAVILVSSELPEVMGMSDRIV 478 A+WLAT P +LILDEPT+GIDV +K + F+ + +G++++ +SSE+PEV+ SDR++ Sbjct: 427 ARWLATDPGMLILDEPTRGIDVRAKQEIMDFVIAMCRKGMSILFISSEIPEVLRCSDRML 486 Query: 479 VMHQGRVQQVFTRAEASAEALAAAASG 505 V+ R + R E +++ +G Sbjct: 487 VLRDRRACGEYRRGELDEQSVLQVIAG 513 Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 16/230 (6%) Query: 261 NTGDQTAPVLEV----KHLSHPSEFDDVSFAVRPGEILGFYGLVGAGRSEVMHALFGLSP 316 + G Q P+LE+ K + DV + PGE+ G GAG+S ++ L G+ Sbjct: 4 SVGTQARPMLELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHE 63 Query: 317 EAQGAVCIDGREVKLCSPAQAIAHGLAYVPEDRQRQGALLSLPIFQNITLPVLPGIGFFL 376 G + +DGR + S +A A G++ V Q +L + +NI +G + Sbjct: 64 PDGGKIELDGRAIAPASTLEAQALGISTV---YQEVNLCPNLSVAENIF------VGRYP 114 Query: 377 RRHRR---REIDIARRLCEQLELKASHFHQHVAQLSGGNQQKVVLAKWLATQPRVLILDE 433 R R + + R Q ++ QQ V +++ L+ +VLILDE Sbjct: 115 TRFGRIDWKSVHTQSRQLLQQLQIDIDVAAPLSSYPLAIQQMVAISRALSVSAKVLILDE 174 Query: 434 PTKGIDVGSKAAVHRFIGELVAQGLAVILVSSELPEVMGMSDRIVVMHQG 483 PT +D + + + L QG+A++ V+ L + +SDRI V+ G Sbjct: 175 PTSSLDEAEVQQLFKVLRRLREQGMAILFVTHFLDQTYEISDRITVLRNG 224 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,557,202 Number of extensions: 68535 Number of successful extensions: 969 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 584 Number of HSP's successfully gapped: 245 Length of query: 523 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 433 Effective length of database: 1,193,720 Effective search space: 516880760 Effective search space used: 516880760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)