BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0132.p
         (475 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313724|ref|YP_003777816.1| L-fuculokinase [Herbaspirillum ...   910   0.0  

>gi|300313724|ref|YP_003777816.1| L-fuculokinase [Herbaspirillum
           seropedicae SmR1]
          Length = 478

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/478 (96%), Positives = 466/478 (97%), Gaps = 3/478 (0%)

Query: 1   MMQAAT---LTVSSAVAAAIAVFDIGKTNIKLTLVDEHGQELAVRRRPNQPRQDGPYPHH 57
           MMQAAT    +  +A  AAIAVFDIGKTNIKLTLVDEHGQELAVRRRPNQPRQDGPYPHH
Sbjct: 1   MMQAATHNASSAVAAAVAAIAVFDIGKTNIKLTLVDEHGQELAVRRRPNQPRQDGPYPHH 60

Query: 58  DVAAIEAWLLENLAALARRRRIRAIVPVTHGATAALVDEAGIVLPVADYEHDFALPPAHR 117
           DVAAIEAWLLENLAALAR+ RIRAIVPVTHGATAALVDEAG+VLPVADYEHDFALPPAHR
Sbjct: 61  DVAAIEAWLLENLAALARQWRIRAIVPVTHGATAALVDEAGLVLPVADYEHDFALPPAHR 120

Query: 118 PYESLRPPFAQSASPLLGMGLNLGRQLYWQSQRYPDAFARARYLLMYPQYWSWRLSGVAA 177
           PYESLRPPFAQSASPLLGMGLNLGRQLYWQSQRYPDAFARARYLLMYPQYWSWRLSGVAA
Sbjct: 121 PYESLRPPFAQSASPLLGMGLNLGRQLYWQSQRYPDAFARARYLLMYPQYWSWRLSGVAA 180

Query: 178 GELSSLGCHTDLWQPGQQCYSSLLAQCNWTALMPPLRAAWERLGPLRPELAQRTGLPADC 237
           GELSSLGCHTDLWQPGQQCYSSLLAQCNWT LMPPLRAAWERLGPLRPELAQRTGLPADC
Sbjct: 181 GELSSLGCHTDLWQPGQQCYSSLLAQCNWTPLMPPLRAAWERLGPLRPELAQRTGLPADC 240

Query: 238 AVLCGVHDSNASLLRYLRGAGGGPRIVLSSGTWLIAAALDGCVSGLREEADMLANVNVLG 297
           AVLCGVHDSNASLLRYLRG GGGPRIVLSSGTWLIAAALDGCVSGLREEADMLANVNVLG
Sbjct: 241 AVLCGVHDSNASLLRYLRGTGGGPRIVLSSGTWLIAAALDGCVSGLREEADMLANVNVLG 300

Query: 298 APVACMRFMGGREFAQIAGDDLPCSAEQLQALIDAQVFALPCFSECGGPFAGRRGSIVGQ 357
           APVACMRFMGGREFAQIAGDDLPCSAEQLQALIDAQVFALPCFSECGGPFAGRRGSIVGQ
Sbjct: 301 APVACMRFMGGREFAQIAGDDLPCSAEQLQALIDAQVFALPCFSECGGPFAGRRGSIVGQ 360

Query: 358 APQQPGSRYALATLYCALMTAYCLDALDAPGEIVVEGSFTANPHFAALLAALVSRTVYRS 417
           APQQPGSRYALATLYCALMTAYCLDALDAPGEIVVEGSFTANPHFAALLAALVSRTVYRS
Sbjct: 361 APQQPGSRYALATLYCALMTAYCLDALDAPGEIVVEGSFTANPHFAALLAALVSRTVYRS 420

Query: 418 SDASGTTLGGWLLDRWERAPETATLPALLPAEPLALRGLAAYREDWLRKLSELERVAA 475
           SDASGTTLGGWLLDRWERAPETATLPALLPAEPLALRGLAAYREDWLRKL ELERVAA
Sbjct: 421 SDASGTTLGGWLLDRWERAPETATLPALLPAEPLALRGLAAYREDWLRKLGELERVAA 478


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,490,264
Number of extensions: 64085
Number of successful extensions: 243
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 2
Length of query: 475
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 386
Effective length of database: 1,198,455
Effective search space: 462603630
Effective search space used: 462603630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)