BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0131.p (540 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313723|ref|YP_003777815.1| chaperonin GroEL [Herbaspirillu... 1060 0.0 gi|300310329|ref|YP_003774421.1| chaperonin GroEL [Herbaspirillu... 806 0.0 >gi|300313723|ref|YP_003777815.1| chaperonin GroEL [Herbaspirillum seropedicae SmR1] Length = 540 Score = 1060 bits (2742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 539/540 (99%), Positives = 539/540 (99%) Query: 1 MSAKQVKFHDTARARIVKGVNVLADAVKVTLGPKGRNVLLDRSFGAPVITKDGVSVAKEI 60 MSAKQVKFHDTARARIVKGVNVLADAVKVTLGPKGRNVLLDRSFGAPVITKDGVSVAKEI Sbjct: 1 MSAKQVKFHDTARARIVKGVNVLADAVKVTLGPKGRNVLLDRSFGAPVITKDGVSVAKEI 60 Query: 61 ELKDRLENMGAQVVKQVASKTADVAGDGTTTATVLAQSIVQEGMKYVAAGMNPMDLKRGI 120 ELKDRLENMGAQVVKQVASKTADVAGDGTTTATVLAQSIVQEGMKYVAAGMNPMDLKRGI Sbjct: 61 ELKDRLENMGAQVVKQVASKTADVAGDGTTTATVLAQSIVQEGMKYVAAGMNPMDLKRGI 120 Query: 121 DKAVTAAIDELRKISRPITTNKEIAQVGAISANSDEAIGNIIAQAMDKVGKEGVITVEDG 180 DKAVTAAIDELRKISRPITTNKEIAQVGAISANSDEAIGNIIAQAMDKVGKEGVITVEDG Sbjct: 121 DKAVTAAIDELRKISRPITTNKEIAQVGAISANSDEAIGNIIAQAMDKVGKEGVITVEDG 180 Query: 181 KSLENELDVVEGMQFDRGYLSPYFINDPDKQLCQLDDPLVLLYDKKISSIRELLPVLEMT 240 KSLENELDVVEGMQFDRGYLSPYFINDPDKQLCQLDDPLVLLYDKKISSIRELLPVLEMT Sbjct: 181 KSLENELDVVEGMQFDRGYLSPYFINDPDKQLCQLDDPLVLLYDKKISSIRELLPVLEMT 240 Query: 241 AKAGKPLFIVAEDIDGEALATLVVNSVRGVLKVAAVKAPGFGDRRKAMLEDLAVLTGGTV 300 AKAGKPLFIVAEDIDGEALATLVVNSVRGVLKVAAVKAPGFGDRRKAMLEDLAVLTGGTV Sbjct: 241 AKAGKPLFIVAEDIDGEALATLVVNSVRGVLKVAAVKAPGFGDRRKAMLEDLAVLTGGTV 300 Query: 301 ISEETSKSLEKTALEDLGSAKRVEVRKDSTTVIDGAGAQDKIDARVKAIQAQIEETTSDY 360 ISEET KSLEKTALEDLGSAKRVEVRKDSTTVIDGAGAQDKIDARVKAIQAQIEETTSDY Sbjct: 301 ISEETGKSLEKTALEDLGSAKRVEVRKDSTTVIDGAGAQDKIDARVKAIQAQIEETTSDY 360 Query: 361 DREKLQERVAKLAGGVAVIKIGAATEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALL 420 DREKLQERVAKLAGGVAVIKIGAATEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALL Sbjct: 361 DREKLQERVAKLAGGVAVIKIGAATEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALL 420 Query: 421 RARAAISKLEGANADQNAGIQIVLRALEAPLRVIAANAGDEPSVVVAKVYSGKGNFGYNA 480 RARAAISKLEGANADQNAGIQIVLRALEAPLRVIAANAGDEPSVVVAKVYSGKGNFGYNA Sbjct: 421 RARAAISKLEGANADQNAGIQIVLRALEAPLRVIAANAGDEPSVVVAKVYSGKGNFGYNA 480 Query: 481 ANGEYGDMVELGVVDPTKVTRTALQNAASVASLILTTDATVAEAPAEEKEASPAAAALDM 540 ANGEYGDMVELGVVDPTKVTRTALQNAASVASLILTTDATVAEAPAEEKEASPAAAALDM Sbjct: 481 ANGEYGDMVELGVVDPTKVTRTALQNAASVASLILTTDATVAEAPAEEKEASPAAAALDM 540 >gi|300310329|ref|YP_003774421.1| chaperonin GroEL [Herbaspirillum seropedicae SmR1] Length = 549 Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/531 (76%), Positives = 468/531 (88%), Gaps = 1/531 (0%) Query: 1 MSAKQVKFHDTARARIVKGVNVLADAVKVTLGPKGRNVLLDRSFGAPVITKDGVSVAKEI 60 M+AKQV F D ARA++V GVN+LA+AVKVTLGPKGRNV+L+RSFGAP +TKDGVSVAKEI Sbjct: 1 MAAKQVIFGDEARAKVVNGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEI 60 Query: 61 ELKDRLENMGAQVVKQVASKTADVAGDGTTTATVLAQSIVQEGMKYVAAGMNPMDLKRGI 120 ELKD+LENMGAQ+VK+VASKT+D AGDGTTTATVLAQ+IV+EG KYVAAG NP DLKRGI Sbjct: 61 ELKDKLENMGAQLVKEVASKTSDNAGDGTTTATVLAQAIVREGFKYVAAGFNPTDLKRGI 120 Query: 121 DKAVTAAIDELRKISRPITTNKEIAQVGAISANSDEAIGNIIAQAMDKVGKEGVITVEDG 180 DKAVTA + E++ +++P TT+KEIAQVG+ISANSD IG+IIA+AM+KVGKEGVITVEDG Sbjct: 121 DKAVTAIVGEVKNLAKPTTTSKEIAQVGSISANSDADIGDIIAKAMEKVGKEGVITVEDG 180 Query: 181 KSLENELDVVEGMQFDRGYLSPYFINDPDKQLCQLDDPLVLLYDKKISSIRELLPVLEMT 240 KSLENELD+VEGMQFDRGYLSPYFIN+ +KQ+ LD+P +LL+DKKIS+IR+LLPVLE Sbjct: 181 KSLENELDIVEGMQFDRGYLSPYFINNQEKQIVALDNPFILLFDKKISNIRDLLPVLEQV 240 Query: 241 AKAGKPLFIVAEDIDGEALATLVVNSVRGVLKVAAVKAPGFGDRRKAMLEDLAVLTGGTV 300 AKAG+PL IVAED++GEALATLVVN++RG+LK AAVKAPGFGDRRKAMLED+A+LTGG V Sbjct: 241 AKAGRPLLIVAEDVEGEALATLVVNNIRGILKTAAVKAPGFGDRRKAMLEDIAILTGGQV 300 Query: 301 ISEETSKSLEKTALEDLGSAKRVEVRKDSTTVIDGAGAQDKIDARVKAIQAQIEETTSDY 360 I+EE +LEK L +LG AKRVE+ K++TT+IDG G I+ARV I+ QI E TSDY Sbjct: 301 IAEEVGLTLEKATLAELGQAKRVEIGKENTTIIDGNGEAAGIEARVAMIRTQIGEATSDY 360 Query: 361 DREKLQERVAKLAGGVAVIKIGAATEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALL 420 DREKLQERVAKLAGGVA+IK+GAATEVEMKEKK RV+DALHATRAAVEEG+VPGGGVALL Sbjct: 361 DREKLQERVAKLAGGVALIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALL 420 Query: 421 RARAAISKLEGANADQNAGIQIVLRALEAPLRVIAANAGDEPSVVVAKVYSGKGNFGYNA 480 RARA + L+G N DQ AGI+IVLRA+E PLR I NAGDEPSVVV KV G GNFGYNA Sbjct: 421 RARANVKDLKGDNPDQEAGIKIVLRAIEEPLRQIVFNAGDEPSVVVNKVLEGSGNFGYNA 480 Query: 481 ANGEYGDMVELGVVDPTKVTRTALQNAASVASLILTTDATVAEAPAEEKEA 531 +NG YGD+VELGV+DP KVTR+ALQNAASVASLILTTDA VAE AE+K A Sbjct: 481 SNGTYGDLVELGVLDPAKVTRSALQNAASVASLILTTDALVAEV-AEDKPA 530 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.130 0.342 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,376,876 Number of extensions: 53526 Number of successful extensions: 206 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 206 Number of HSP's successfully gapped: 2 Length of query: 540 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 450 Effective length of database: 1,193,720 Effective search space: 537174000 Effective search space used: 537174000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)