BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0127.p (307 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313720|ref|YP_003777812.1| LysR family transcription regul... 634 0.0 gi|300310278|ref|YP_003774370.1| transcription regulator protein... 446 e-127 gi|300310624|ref|YP_003774716.1| transcription regulator protein... 315 4e-87 gi|300313187|ref|YP_003777279.1| transcription regulator protein... 145 5e-36 gi|300312196|ref|YP_003776288.1| LysR family transcription regul... 142 4e-35 >gi|300313720|ref|YP_003777812.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 634 bits (1635), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/307 (99%), Positives = 306/307 (99%) Query: 1 MIKNDVMDYLPRMVIFSRVVEMGSFSGAASALGLSSSSVSQHISALEAAMGMTLLHRTTR 60 MIKNDVMDYLPRMVIFSRVVEMGSFSGAASALGLSSSSVSQHISALEAAMGMTLLHRTTR Sbjct: 1 MIKNDVMDYLPRMVIFSRVVEMGSFSGAASALGLSSSSVSQHISALEAAMGMTLLHRTTR 60 Query: 61 KLSLTEAGQTFYANCARIVVLANEARQTAENLHKEVVGELRIATSSFMASEYLVPALEGL 120 KLSLTEAGQTFYANCARIVVLANEARQTAENLHKEVVGELRIATSSFMASEYLVPALEGL Sbjct: 61 KLSLTEAGQTFYANCARIVVLANEARQTAENLHKEVVGELRIATSSFMASEYLVPALEGL 120 Query: 121 IQQYPKLRINIDVNDHNVDLMEKGVDIALRAGKAPGPEDVFLAPLESVLCAAPAYLQRSA 180 IQQYPKLRINIDVNDHNVDLMEKGVDIALRAGKAPGPEDVFLAPLESVLCAAPAYLQRSA Sbjct: 121 IQQYPKLRINIDVNDHNVDLMEKGVDIALRAGKAPGPEDVFLAPLESVLCAAPAYLQRSA 180 Query: 181 PIRTPEDLMGHEFMFFTPLGSTMELGLRDRHGQQVQMRLTPRISVNHTHSLHKLTLQGHG 240 PIRTPEDLMGHEFMFFTPLGSTMELGLRDRHGQQVQMRLTPRISVNHTHSLHKLTLQGHG Sbjct: 181 PIRTPEDLMGHEFMFFTPLGSTMELGLRDRHGQQVQMRLTPRISVNHTHSLHKLTLQGHG 240 Query: 241 VARLLQTKVQEDLDAGRLQRVLPEWTANGYCAFLSTNYRDQVPQKVLVCVEHIQAYFRRR 300 VARLLQTKVQEDLDAGRLQRVLPEWTANGYCAFLSTNYRDQVPQKVLVCVEHIQ YFRRR Sbjct: 241 VARLLQTKVQEDLDAGRLQRVLPEWTANGYCAFLSTNYRDQVPQKVLVCVEHIQDYFRRR 300 Query: 301 HPLRQEG 307 HPLRQEG Sbjct: 301 HPLRQEG 307 >gi|300310278|ref|YP_003774370.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 446 bits (1148), Expect = e-127, Method: Compositional matrix adjust. Identities = 209/301 (69%), Positives = 251/301 (83%) Query: 2 IKNDVMDYLPRMVIFSRVVEMGSFSGAASALGLSSSSVSQHISALEAAMGMTLLHRTTRK 61 +KN+ MDYLPRMVIFSRVVE+G+FS AA LGL+SSSVSQHISALEA +G TLLHRTTRK Sbjct: 1 MKNNAMDYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAMLGTTLLHRTTRK 60 Query: 62 LSLTEAGQTFYANCARIVVLANEARQTAENLHKEVVGELRIATSSFMASEYLVPALEGLI 121 LSLTEAG +FYANC+RIV LA+EARQ E+LHKE++GELRIA SSFMASEYLVPAL+ I Sbjct: 61 LSLTEAGHSFYANCSRIVDLASEARQLTESLHKELLGELRIAASSFMASEYLVPALDDFI 120 Query: 122 QQYPKLRINIDVNDHNVDLMEKGVDIALRAGKAPGPEDVFLAPLESVLCAAPAYLQRSAP 181 + +PKLRINIDVNDHN+DLM+K VD+ALR GK DV+LA L +VLCA+PAYL+ AP Sbjct: 121 RAHPKLRINIDVNDHNIDLMDKSVDLALRVGKTSSENDVYLASLPAVLCASPAYLRAHAP 180 Query: 182 IRTPEDLMGHEFMFFTPLGSTMELGLRDRHGQQVQMRLTPRISVNHTHSLHKLTLQGHGV 241 IR PEDL H+F+FFTP GS++E+ L++R GQ Q+ LTPR+S NH SL +L LQGHGV Sbjct: 181 IRHPEDLPQHDFLFFTPHGSSVEVSLKNRGGQCAQLHLTPRVSANHARSLRRLALQGHGV 240 Query: 242 ARLLQTKVQEDLDAGRLQRVLPEWTANGYCAFLSTNYRDQVPQKVLVCVEHIQAYFRRRH 301 ARLL KVQEDLDAGRL+ VLP+W + YCAFL+T YR+ PQK++ C+EH++AYFR RH Sbjct: 241 ARLLACKVQEDLDAGRLEVVLPDWELDVYCAFLTTKYRESPPQKIVKCIEHLEAYFRSRH 300 Query: 302 P 302 P Sbjct: 301 P 301 >gi|300310624|ref|YP_003774716.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 315 bits (806), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 153/297 (51%), Positives = 208/297 (70%) Query: 7 MDYLPRMVIFSRVVEMGSFSGAASALGLSSSSVSQHISALEAAMGMTLLHRTTRKLSLTE 66 +D L RM F+RVVE+G+FS AA ALGL++SSVSQH+ ALE ++ TLL+R+TRKLSLTE Sbjct: 6 IDDLARMATFARVVELGAFSRAAKALGLTTSSVSQHVRALELSLQATLLNRSTRKLSLTE 65 Query: 67 AGQTFYANCARIVVLANEARQTAENLHKEVVGELRIATSSFMASEYLVPALEGLIQQYPK 126 AG FY +CA IV A+EA Q+ L+ E+VGE+RIA SSFM+++YL+PAL I+ PK Sbjct: 66 AGTLFYKHCAHIVTAASEAEQSIAVLNNEMVGEVRIAVSSFMSTKYLIPALHDFIRHNPK 125 Query: 127 LRINIDVNDHNVDLMEKGVDIALRAGKAPGPEDVFLAPLESVLCAAPAYLQRSAPIRTPE 186 +R+ ++V D+NVDL+E+ +D+ALRAG+ P D+FL VLCA+P+YL PI +P Sbjct: 126 VRLRLEVADNNVDLIEQRIDLALRAGRNRQPGDIFLGRFSDVLCASPSYLAVRPPIHSPV 185 Query: 187 DLMGHEFMFFTPLGSTMELGLRDRHGQQVQMRLTPRISVNHTHSLHKLTLQGHGVARLLQ 246 DL+ H+F+ F P G L + V++RL PRIS NH SL L L GHG+ RLL+ Sbjct: 186 DLLHHDFLLFNPHGEPCFLEFSNAASGTVRVRLQPRISANHARSLRYLALDGHGITRLLE 245 Query: 247 TKVQEDLDAGRLQRVLPEWTANGYCAFLSTNYRDQVPQKVLVCVEHIQAYFRRRHPL 303 K+ +DL AGRL +VLP+WT G+ +++ +RD +P KV C+EHIQ YF PL Sbjct: 246 CKIDDDLRAGRLVQVLPDWTLGGFDVYVTVRHRDNMPLKVRQCLEHIQHYFEVVLPL 302 >gi|300313187|ref|YP_003777279.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 145 bits (365), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 94/298 (31%), Positives = 153/298 (51%), Gaps = 6/298 (2%) Query: 7 MDYLPRMVIFSRVVEMGSFSGAASALGLSSSSVSQHISALEAAMGMTLLHRTTRKLSLTE 66 M+ + + F GSFS AA LGL+S++V ++++ LE+++G+ L HR+TRKLSLTE Sbjct: 1 METMTSIECFVAAAHAGSFSAAARQLGLTSAAVGKNVARLESSLGVRLFHRSTRKLSLTE 60 Query: 67 AGQTFYANCARIVVLANEARQTAENLHKEVVGELRIATSSFMASEYLVPALEGLIQQYPK 126 AG+ F + A + + G L+++ + +Y+VP L + +YP Sbjct: 61 AGERFLQEVGGGLQAIRSAVANLASAGGQPAGTLKVSMGTGFGRQYIVPLLGEFLGRYPG 120 Query: 127 LRINIDVNDHNVDLMEKGVDIALRAGK--APGPEDVFLAPLESVLCAAPAYLQRSAPIRT 184 ++ + + VDL+ +G D A+ G +PG LAP VL A+PAYL P+ + Sbjct: 121 IQPDWHFENRPVDLISEGFDAAIAGGTELSPGVVARELAPAHRVLLASPAYLDAHPPLHS 180 Query: 185 PEDLMGHEFMFF-TP-LGSTMELGLRDRHGQQVQMRLTPRISVNHTHSLHKLTLQGHGVA 242 P DL H + +P G LRDR GQQ + L R++++ ++ ++ G G+ Sbjct: 181 PADLAEHAGILIRSPQTGRVRPFSLRDRSGQQAPVTLQQRMTMSDANAACEVAEAGLGIT 240 Query: 243 RLLQTKVQEDLDAGRLQRVLPEWTAN-GYCAFLSTNYRDQVPQKVLVCVEHIQAYFRR 299 + L+ G L RVLP+W + G + T R +P K V V+ + +FRR Sbjct: 241 LVAMPHALPYLEGGTLVRVLPDWYVDTGMLSLYFTAAR-LLPAKTRVFVDFVVEHFRR 297 >gi|300312196|ref|YP_003776288.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 142 bits (358), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 89/284 (31%), Positives = 137/284 (48%), Gaps = 5/284 (1%) Query: 7 MDYLPRMVIFSRVVEMGSFSGAASALGLSSSSVSQHISALEAAMGMTLLHRTTRKLSLTE 66 MD L M F VVE GSF A G S +VS+ +S LE +G+ LLHRTTR+LSLT+ Sbjct: 1 MDKLQAMQTFVAVVESGSFVAAVDVTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTD 60 Query: 67 AGQTFYANCARIVVLANEARQTAENLHKEVVGELRIATSSFMASEYLVPALEGLIQQYPK 126 G+ ++A C ++ + + G LRI E L P +Q+P Sbjct: 61 EGRVYFARCKELLETIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQHPL 120 Query: 127 LRINIDVNDHNVDLMEKGVDIALRAGKAPGPEDVF--LAPLESVLCAAPAYLQRSAPIRT 184 + +NI ++D +DL+E+G D+A+R V LAP+ + CAAP +L R T Sbjct: 121 ITLNITLSDRTIDLLEEGFDMAIRISALGDSRMVARPLAPVRMIACAAPEFLARHGTPGT 180 Query: 185 PEDLMGHEFMFFTPLGSTMELGLRDRHGQQVQMRLTPRISVNHTHSLHKLTLQGHGVARL 244 P +L + F+ ++ + R HG Q+R+ + VN+ + + + G G+A Sbjct: 181 PAELRDYPFISYSYRAGGDDWSFRHVHGDTCQVRVRSTVYVNNGATCRAMAIAGQGIAIQ 240 Query: 245 LQTKVQEDLDAGRLQRVLPEWTANGYCAFLSTNY--RDQVPQKV 286 V + AG+L + W+ G + T Y R +P KV Sbjct: 241 PDFIVNAAIQAGQLVELFEGWS-TGEQLVVHTLYPTRTHLPPKV 283 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 858,555 Number of extensions: 34393 Number of successful extensions: 223 Number of sequences better than 1.0e-08: 49 Number of HSP's gapped: 182 Number of HSP's successfully gapped: 49 Length of query: 307 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 222 Effective length of database: 1,217,395 Effective search space: 270261690 Effective search space used: 270261690 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)