BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0119.p (296 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310336|ref|YP_003774428.1| hypothetical protein Hsero_1003... 158 4e-40 gi|300312311|ref|YP_003776403.1| enzyme involved in meta-pathway... 133 2e-32 gi|300313864|ref|YP_003777956.1| enzyme involved in meta-pathway... 94 2e-20 >gi|300310336|ref|YP_003774428.1| hypothetical protein Hsero_1003 [Herbaspirillum seropedicae SmR1] Length = 305 Score = 158 bits (400), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 98/295 (33%), Positives = 162/295 (54%), Gaps = 8/295 (2%) Query: 4 LTRCGMILLAASLSPLSQATEGGGSTYFSGADNFLLGAVPP-PGLYVLQFGNVYSSTRLN 62 L C ++ +AA P + A EGG S + +G+ + + A+PP PGL+ ++ N SS L Sbjct: 11 LATCALLTMAAG--PAAYAFEGGVSPFLTGSTSEYIAALPPIPGLFAVEQFNYSSSNGLY 68 Query: 63 DDNGNAKAIPGFSVHSKVLATRIVWSTPYQLLGGNLVMHTILPVVNLSVDAAGSSQTKTG 122 D+NGN IP F + TR++ S Q LG + +LPVV+L + AG S+T G Sbjct: 69 DNNGNKLPIP-FKSSAYSATTRLLASYGVQWLGAKVYSQLVLPVVSLHTEVAGHSETHNG 127 Query: 123 LGDITFGPAVAN-HYSAHLHSVYGFDLVAPTGAYNKNDLANIGRNYWSLQPLLAMSYIDK 181 L ++T P + +AH + +GFD+ TG+Y+ ++ Y S QP+LA+ + + Sbjct: 128 LSNVTATPVLLRWDVAAHTNVTFGFDISLETGSYSPTR-PSVAVGYTSWQPVLAVRHNNP 186 Query: 182 DGFNGDFKATFNFNQTNSATHYRSGTEFNLDYAAGYSVARDWVAGISGYWYRQIADDEQQ 241 DG + N NS+T+YRSGT + D+ G++V + W G++G + Q DD Q Sbjct: 187 DGLDLGISNRLLINDRNSSTNYRSGTAYVADFIGGWNVGK-WKFGVTGSYLNQFTDDRQN 245 Query: 242 GANLSGTRGRAFAIGPSVKYDNGRGFVLTAKIQREMAVSNRTQGTALALRASVPF 296 GA+++G R R+ ++GP+V Y+ G F + QR + +N + A+ + ++P Sbjct: 246 GADITGNRARSLSLGPTVAYNAGP-FSINMNYQRGLYAANTAKSDAIWINFAMPL 299 >gi|300312311|ref|YP_003776403.1| enzyme involved in meta-pathway of phenol degradation protein [Herbaspirillum seropedicae SmR1] Length = 316 Score = 133 bits (334), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/304 (31%), Positives = 147/304 (48%), Gaps = 24/304 (7%) Query: 9 MILLAASLSPLSQATEGGGSTYFSGADNFLLGAVPPPGLYVLQFGNV------YSSTRLN 62 ++ L A S +QA E G + G +F G +PP FG V YS++ L Sbjct: 21 VVCLGAFFSLPAQAVEQGATITPIGITDFGAGMLPPSS----PFGTVGVRASYYSASTLK 76 Query: 63 DDNGNAKAIPG-FSVHSKVLATRIVWSTPYQLLGGNLVMHTILPVVNLS--------VDA 113 D G K+IP F + K LA + T ++LG + +LP +++S Sbjct: 77 D--GAGKSIPNDFHIDVKTLALAYFYMTDVEVLGARFGVGGVLPFIDISGGLKVGTPAGP 134 Query: 114 AGSSQTKTGLGDITFGPAV-ANHYSAHLHSVYGFDLVAPTGAYNKNDLANIGRNYWSLQP 172 S +GLGD+ P + A + G + APTGAY+ + N G N+W+ P Sbjct: 135 LSVSGRDSGLGDMQVLPFILAWQLPPSVFVNAGLMIQAPTGAYSTSKAFNAGVNHWTYSP 194 Query: 173 LLAMSYIDKDGFNGDFKATFNFNQTNSATHYRSGTEFNLDYAAGYSVARDWVAGISGYWY 232 + +YI G + + N N N AT YRSG E+ ++A G + + W AG++GY Y Sbjct: 195 FVGATYITSSGLELSTQVSLNVNTVNPATRYRSGVEYRQEFAIGQHI-QSWTAGLAGYVY 253 Query: 233 RQIADDEQQGANLSGTRGRAFAIGPSVKYDNGRGFVLTAKIQREMAVSNRTQGTALALRA 292 RQ++DD G+ G RGR +A+GP+V + ++T +E NR +G LALR Sbjct: 254 RQLSDDSGPGSG-DGNRGRVYALGPAVSFAQPGLPLVTLHGYQEFGARNRAEGYNLALRL 312 Query: 293 SVPF 296 ++ F Sbjct: 313 AMTF 316 >gi|300313864|ref|YP_003777956.1| enzyme involved in meta-pathway of phenol degradation protein [Herbaspirillum seropedicae SmR1] Length = 316 Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 134/290 (46%), Gaps = 33/290 (11%) Query: 26 GGSTYFSGADNFLLGAVPPPGLYVLQFGNVYSSTRLNDDNGNAKAIPG---FSVHSKVLA 82 GG+++F GA L G PG Y +++ +T+L D+NGN P SV + V Sbjct: 31 GGTSFFDGAP--LPGG---PGFYFVEYLTYSKATKLVDNNGNRLGFPATQDISVFAPV-- 83 Query: 83 TRIVWSTPYQLLGG-NLVMHTILP-VVNLSVDAAGSS---QTKTGLGDITFGPAVANHYS 137 T+ ++ P G L ++P V + VD ++ + TG+GDI+ G +V Y Sbjct: 84 TQFIYVPPGAKFGNKQLGFQVLVPWVASAKVDDGANNAVLRGNTGIGDISAGVSV--QYD 141 Query: 138 AHLHSV-------YGFDLVAPTGAYNKNDLANIGRNYWSLQPLLAMSYIDKDGFNGDFKA 190 + + + + PTGAY++N N G N W+ P A + + ++ Sbjct: 142 PIMGAQGPLYAQRFELQFILPTGAYDRNATVNPGSNTWAFDPYWAGTLWASQNLSFSWRL 201 Query: 191 TFNFNQTNSA---------THYRSGTEFNLDYAAGYSVARDWVAGISGYWYRQIADDEQQ 241 + +N N+A + ++G + ++AA Y + W G +GYW +Q+ D + Sbjct: 202 HYLWNARNNAPSAAFGNNVSSTQAGQAAHANFAAEYVLNPTWTVGAAGYWLQQVTDTKVN 261 Query: 242 GANLSGTRGRAFAIGPSVKYDNGRGFVLTAKIQREMAVSNRTQGTALALR 291 GA++SG R R +GP+ +L + +E AV NR + + +R Sbjct: 262 GADVSGRRERVVGLGPAAMMRLSERDLLFFNVYQEFAVRNRAENSKFQIR 311 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 965,684 Number of extensions: 42430 Number of successful extensions: 120 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 109 Number of HSP's successfully gapped: 3 Length of query: 296 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 211 Effective length of database: 1,217,395 Effective search space: 256870345 Effective search space used: 256870345 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)