BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0118.p
         (392 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313454|ref|YP_003777546.1| ABC transporter periplasmic pro...    70   2e-13
gi|300313455|ref|YP_003777547.1| ABC transporter periplasmic pro...    64   2e-11

>gi|300313454|ref|YP_003777546.1| ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 329

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 138/286 (48%), Gaps = 16/286 (5%)

Query: 8   ASAGLVAASMSAGISFAQETTVPRVGFVAGAGGYPKMAVTNQAFFDGLADAGYKDGRTMQ 67
           A AG +A S     + A E  V    +V     +P +        D L  AG++ G+ ++
Sbjct: 16  AIAGALALSAVCASALAAEKVVAVTSYVE----HPALDAVRDGTKDELVAAGFEPGKNLK 71

Query: 68  VIFRTAEGNMSLMPALIRETLPENVDYLVVSSSPGCAAAKNATTTVPVLCISVQDDPIRE 127
             F++A+ N      + ++ + +N D +V   +P       AT T+P++  ++  DP+  
Sbjct: 72  WEFQSAQANAGTAGQIAKKFVGDNPDVIVAIGTPSAQPMVAATKTIPIVYSAIA-DPMAA 130

Query: 128 GLTSSLASGSGNIVGVHSYLADGISQQLGMLQKLKPGLQTLGILFNPSNATHKRLLSDWE 187
            L         N+ G+ S++ D + +Q+ +++++ P  + +G+++NP  A     L++ +
Sbjct: 131 QLVKDWKPSGTNVTGM-SHMLDPV-KQVEVIKRVVPEAKRVGVVYNPGEANSVSALNNLK 188

Query: 188 RAVQQQRVVIVPMPATVSGDLEKAIYAAKSHKAEIAIGLLGADT--YAMRKEIAEVAKAN 245
             +Q+  + +V   A  S D+     AAKS   +I +     D    ++ + +A+V    
Sbjct: 189 GELQKAGLTLVEAAAPRSVDVAP---AAKSLIGKIDVMYTTTDNNVVSVFESLAKVCNDA 245

Query: 246 DFP-IAMDTPGGYTQMGGVATIGVDIVPLYRRGALELMVPMLKGKK 290
             P IA DT  G  + G VA +GV+   + R+   +L+V +LKG+K
Sbjct: 246 KLPLIASDT--GSVKRGAVAALGVNFYDMGRQTG-KLVVRILKGEK 288


>gi|300313455|ref|YP_003777547.1| ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 118/253 (46%), Gaps = 12/253 (4%)

Query: 41  YPKMAVTNQAFFDGLADAGYKDGRTMQVIFRTAEGNMSLMPALIRETLPENVDYLVVSSS 100
           +P +        D L + G++ G+ ++  +++A+GN      + R+ + +  D +V  ++
Sbjct: 41  HPALDAVRDGVKDELKEEGFEAGKNLKWEYQSAQGNTGTAAQIARKFVGDKPDAIVAIAT 100

Query: 101 PGCAAAKNATTTVPVLCISVQDDPIREGLTSSLASGSGNIVGVHSYLADGISQQLGMLQK 160
           P   A   AT ++PV+   V  DP+   L     +   N+ GV   L   + +Q+ ++++
Sbjct: 101 PSAQALVAATKSIPVVYSGVT-DPVAAQLVKDWKASGTNVTGVSDLLE--LDKQVDLIKR 157

Query: 161 LKPGLQTLGILFNPSNATHKRLLSDWERAVQQQRVVIVPMPATVSGDLEKAIYAAKSHKA 220
           + P  + +G+++NP  A    ++   +  + +  + +V   A  S D+     AAKS   
Sbjct: 158 VVPNAKRVGMVYNPGEANSAVVVKALKELLAKSNMTLVEAAAPRSVDVGS---AAKSLIG 214

Query: 221 EIAIGLLGADTYAMRKEIAEVAKANDFPI---AMDTPGGYTQMGGVATIGVDIVPLYRRG 277
           ++ +     D   +    A V   ND  I   A DT     + G +A +GV+   L R+ 
Sbjct: 215 KVDVIYTNTDNNVVSAYEALVKVGNDAKIPLVASDTDS--VKRGAIAALGVNYYDLGRQT 272

Query: 278 ALELMVPMLKGKK 290
             +++  +LKG+K
Sbjct: 273 G-KVVGRILKGEK 284


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,193,771
Number of extensions: 50026
Number of successful extensions: 165
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 2
Length of query: 392
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 305
Effective length of database: 1,207,925
Effective search space: 368417125
Effective search space used: 368417125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)