BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0113.p
         (292 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310596|ref|YP_003774688.1| 2-keto-4-pentenoate hydratase/2...   150   1e-37
gi|300312873|ref|YP_003776965.1| hypothetical protein Hsero_3578...   131   8e-32

>gi|300310596|ref|YP_003774688.1| 2-keto-4-pentenoate
           hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score =  150 bits (378), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/219 (38%), Positives = 131/219 (59%), Gaps = 17/219 (7%)

Query: 78  FCVGKNYREHAAEFSKSGFDSSAKEGEHVPEAPVIFTKPASTVIATGEKVPSHPKVTQQL 137
            C+G NY +HAAE +             +P  PV+F K  S V+   + V   P+ +++ 
Sbjct: 74  ICIGLNYADHAAESNLP-----------IPAEPVVFNKWTSAVVGPNDNV-KIPRGSKKT 121

Query: 138 DYEAELAVIIGVGGSNISKEDAYRHVWGYTIVNDFTARDLQKLHR--QWFLGKSLDGFCP 195
           D+E EL VIIG GGS I ++DA  HV GY +VND + R+ Q + R   W  GK  D F P
Sbjct: 122 DWEVELGVIIGKGGSYIDEKDAMSHVAGYCVVNDVSEREYQ-IERGGTWDKGKGCDTFGP 180

Query: 196 MGPYAVTADEV-NPENLNVRCWINGELRQDASTADLIFDIPSLIETISAGIELRPGDIIA 254
           +GP+ VT DEV +P+ L +   ++G+  Q+ +T+ +IF++  ++  +S  + L+PGD+I+
Sbjct: 181 IGPWLVTRDEVADPQKLGMWLEVDGKRYQNGNTSTMIFNVAHIVSYLSRFMSLQPGDVIS 240

Query: 255 TGTPAGVGIGFNPPK-FLKSGDKMRIEISGLGVLENEVL 292
           TGTP GVG+G  P   +L++G  +R+ I GLG  E + +
Sbjct: 241 TGTPPGVGMGVKPEAVYLRAGQTIRLGIDGLGEQEQKTI 279


>gi|300312873|ref|YP_003776965.1| hypothetical protein Hsero_3578
           [Herbaspirillum seropedicae SmR1]
          Length = 227

 Score =  131 bits (329), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 83/216 (38%), Positives = 106/216 (49%), Gaps = 22/216 (10%)

Query: 73  PARNIFCVGKNYREHAAEFSKSGFDSSAKEGEHVPEAPVIFTKPASTVIATGEKVPSHPK 132
           P R I+CVG+NY  HA E    G D          E P  F KPA  V+ T   VP +P 
Sbjct: 22  PVRRIYCVGRNYAAHAREM---GHDPDR-------EPPFFFMKPADAVVPTDSVVP-YPV 70

Query: 133 VTQQLDYEAELAVIIGVGGSNISKEDAYRHVWGYTIVNDFTARDLQ----KLHRQWFLGK 188
            T    +E EL V +  GG NI  E A   V+GY +  D T RD+Q    KL R W + K
Sbjct: 71  ATSDYHHEIELVVALAKGGRNIPVEQALELVFGYAVGLDMTRRDIQSQAKKLGRPWDMAK 130

Query: 189 SLDGFCPMGPYAVTADEVNPENLNVRCWINGELRQDASTADLIFDIPSLIETISAGIELR 248
             D   P  P    A   +P+   V   +NGE+RQ    ADLI+ +   I  +S  +EL 
Sbjct: 131 GFDQSAPCAPIVPVAQAGHPDQGAVWLKVNGEVRQQGDLADLIWSVAETISYLSGLVELF 190

Query: 249 PGDIIATGTPAGVGIGFNPPKFLKSGDKMRIEISGL 284
           PGD+I TGTP GVG        +  GDK++  + GL
Sbjct: 191 PGDLIFTGTPEGVGA-------VVKGDKLQGHVDGL 219


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 973,554
Number of extensions: 42900
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 2
Length of query: 292
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 208
Effective length of database: 1,222,130
Effective search space: 254203040
Effective search space used: 254203040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)