BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0107.p (605 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313709|ref|YP_003777801.1| L-glutamine:D-fructose-6-phosph... 1238 0.0 gi|300313838|ref|YP_003777930.1| glucosamine 6-phosphate synthas... 106 6e-24 gi|300312583|ref|YP_003776675.1| glutamine phosphoribosylpyropho... 67 4e-12 >gi|300313709|ref|YP_003777801.1| L-glutamine:D-fructose-6-phosphate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 605 Score = 1238 bits (3202), Expect = 0.0, Method: Compositional matrix adjust. Identities = 604/605 (99%), Positives = 605/605 (100%) Query: 1 MCGIVGAVAQQNVTPILLEGLKRLEYRGYDSCGVALHVDGKLQRSRSTSRVAELQQQIAQ 60 MCGIVGAVAQQNVTPILLEGLKRLEYRGYDSCGVALHVDGKLQRSRSTSRVAELQQQIAQ Sbjct: 1 MCGIVGAVAQQNVTPILLEGLKRLEYRGYDSCGVALHVDGKLQRSRSTSRVAELQQQIAQ 60 Query: 61 SGLSGFTGIAHTRWATHGAPATHNAHPHFSRDRIALVHNGIIENHDELRAELQAVGYVFE 120 SGLSGFTGIAHTRWATHGAPATHNAHPHFSRDRIALVHNGIIENHDELRAELQAVGYVFE Sbjct: 61 SGLSGFTGIAHTRWATHGAPATHNAHPHFSRDRIALVHNGIIENHDELRAELQAVGYVFE 120 Query: 121 SQTDTEVIAHLVDHMYDGDLFNTVQQAVRRLTGAYAIAVFCADEPHRVVAARQGSPLIVG 180 SQTDTEVIAHLVDHMYDGDLFNTVQQAVRRLTGAYAIAVFCADEPHRVVAARQGSPLIVG Sbjct: 121 SQTDTEVIAHLVDHMYDGDLFNTVQQAVRRLTGAYAIAVFCADEPHRVVAARQGSPLIVG 180 Query: 181 VGEGQNFVASDAMALAGTTDQIIYLEEGDVVDLQLQKVWIVDAAGRPAEREVRTVQAYTS 240 VGEGQNFVASDAMALAGTTDQIIYLEEGDVVDLQLQKVWIVDAAGRPAEREVRTVQAYTS Sbjct: 181 VGEGQNFVASDAMALAGTTDQIIYLEEGDVVDLQLQKVWIVDAAGRPAEREVRTVQAYTS 240 Query: 241 AVELGPYQHYMQKEIFEQPRAIADTLEGVVGIMPELFGDKAYKVFKEIDSILILACGTSY 300 AVELGPYQHYMQKEIFEQPRAIADTLEGVVGIMPELFGDKAYKVFKEIDSILILACGTSY Sbjct: 241 AVELGPYQHYMQKEIFEQPRAIADTLEGVVGIMPELFGDKAYKVFKEIDSILILACGTSY 300 Query: 301 YAGLTAKYWLESIAKIPVNVEIASEYRYRDSVPNPKSLVVTISQSGETADTLAALKHARS 360 YAGLTAKYWLESIAKIPVNVEIASEYRYRDSVPNPKSLVVTISQSGETADTLAALKHARS Sbjct: 301 YAGLTAKYWLESIAKIPVNVEIASEYRYRDSVPNPKSLVVTISQSGETADTLAALKHARS 360 Query: 361 LGMQHTLTICNVATSAMVRECELAYITRAGVEVGVASTKAFTTQLAALFLLTLALAQTRG 420 LGMQHTLTICNVATSAMVRECELAYITRAGVEVGVASTKAFTTQLAALFLLTLALAQTRG Sbjct: 361 LGMQHTLTICNVATSAMVRECELAYITRAGVEVGVASTKAFTTQLAALFLLTLALAQTRG 420 Query: 421 LLTEEQEAEHLKAMRHLPAALQSVLALEPSIVAWAESFARRENALFLGRGLHYPIALEGA 480 LLTEEQEAEHLKAMRHLPAALQSVLALEPSIVAWAESFARRENALFLGRGLHYPIALEGA Sbjct: 421 LLTEEQEAEHLKAMRHLPAALQSVLALEPSIVAWAESFARRENALFLGRGLHYPIALEGA 480 Query: 481 LKLKEITYIHAEAYAAGELKHGPLALVTDQMPVVTIAPNDALVEKLKSNMQEVRARGGQL 540 LKLKEITYIHAEAYAAGELKHGPLALVTDQMPVVTIAPNDALVEKLKSNMQEVRARGGQL Sbjct: 481 LKLKEITYIHAEAYAAGELKHGPLALVTDQMPVVTIAPNDALVEKLKSNMQEVRARGGQL 540 Query: 541 YVFADGDSYISSAEGLHVIRMPEHYGVLSPILHVVPLQLLSYHTALARGTDVDKPRNLAK 600 YVFADGDS+ISSAEGLHVIRMPEHYGVLSPILHVVPLQLLSYHTALARGTDVDKPRNLAK Sbjct: 541 YVFADGDSHISSAEGLHVIRMPEHYGVLSPILHVVPLQLLSYHTALARGTDVDKPRNLAK 600 Query: 601 SVTVE 605 SVTVE Sbjct: 601 SVTVE 605 >gi|300313838|ref|YP_003777930.1| glucosamine 6-phosphate synthase [Herbaspirillum seropedicae SmR1] Length = 336 Score = 106 bits (264), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 96/321 (29%), Positives = 164/321 (51%), Gaps = 36/321 (11%) Query: 290 SILILACGTSYYAGLTAKYWLES-----IAKIPVNVEIA--SEYRYRDSVPNPKSLVVTI 342 +I+ +A G+S +A Y + + +A +P+++ + + RD+ L + + Sbjct: 37 NIVTVARGSSDHAATYCAYLIMARLGRIVASLPMSLVTLNHAPLQVRDA------LAIAV 90 Query: 343 SQSGETADTLAALKHARSLGMQHTLTICNVATSAMVRECELAYITRAGVEVGVASTKAFT 402 SQSG++ D + +++ + G T+ + N A S + + + AGVE VA+TK+F Sbjct: 91 SQSGQSPDVVEPIRYFHAQGAT-TVALVNQADSPLASAAQWSLPLHAGVESSVAATKSFI 149 Query: 403 TQLAALFLLTLALAQTRGLLTEEQEAEHLKAMRHLPAALQSVLALEPSIVAWAESFARRE 462 L A LLT + +A L A+ LP AL++ A + S A + A R Sbjct: 150 ASLVASALLTAHW---------QDDAALLNALAQLPDALRAACACDWSDAVQALTPADR- 199 Query: 463 NALFLGRGLHYPIALEGALKLKEITYIHAEAYAAGELKHGPLALVTDQMPVVTIA---PN 519 + +GRG+ +P+ALE ALK KE I AEA++ E+KHGP+AL+ + P++ A P+ Sbjct: 200 -IMVVGRGIGFPLALEAALKCKETCAIQAEAFSGAEIKHGPIALIEEGYPLLMFAIRGPS 258 Query: 520 DALVEKLKSNMQEVRARGGQLYVFADGDSYISSAEGLHVIRMPEHYGVLSPILHVVPLQL 579 A + L + E+R RG ++ + A D + L V P+ L PI+ + + Sbjct: 259 QAGMLALAA---EMRVRGAKVLLAAPED-VVERDLTLPVAATPD----LDPIVAIQAFYV 310 Query: 580 LSYHTALARGTDVDKPRNLAK 600 ++ + ARG D D+PR+L K Sbjct: 311 MAAQLSAARGMDADRPRHLNK 331 >gi|300312583|ref|YP_003776675.1| glutamine phosphoribosylpyrophosphate amidotransferase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 31/222 (13%) Query: 1 MCGIVGAVAQQNVTPILLEGLKRLEYRGYDSCGVALHVDGKLQRSRSTSRVAELQQQIAQ 60 MCGIVG V+ V +L + L L++RG D+ G+A + ++ V ++ + Sbjct: 1 MCGIVGIVSHSPVNQMLYDALLLLQHRGQDAAGIATNHSNGFSMHKANGLVRDVFRTRNM 60 Query: 61 SGLSGFTGIAHTRWATHGAPAT-HNAHPHFSRDR--IALVHNGIIENHDELRAEL-QAVG 116 L G TGI R+ T G+ ++ A P + I L HNG + N ++L+ E+ + Sbjct: 61 RSLPGNTGIGQVRYPTAGSSSSEEEAQPFYVNAPFGIILAHNGNLTNAEQLKIEMFKNDR 120 Query: 117 YVFESQTDTEVIAHLVDHM-------YDGD---LFNTVQQAVRRLTGAYAIAVFCAD--- 163 + +DTEV+ +++ H Y D LF V +R+ G+YA+ A Sbjct: 121 RHINTDSDTEVLLNVLAHEIQQATTGYSLDPAALFKAVAMVHKRVRGSYAVVAQIAGYGL 180 Query: 164 ----EPHRVVAARQGSPLIVGVGEGQN----FVASDAMALAG 197 +P+ + P+ +G E +AS+++AL G Sbjct: 181 LGFRDPYGI------RPMCLGFNESDKGVEYMMASESVALEG 216 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,839,814 Number of extensions: 77958 Number of successful extensions: 262 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 260 Number of HSP's successfully gapped: 3 Length of query: 605 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 514 Effective length of database: 1,188,985 Effective search space: 611138290 Effective search space used: 611138290 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)