BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0106.p (159 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313708|ref|YP_003777800.1| AsnC family transcription regul... 318 2e-88 gi|300312760|ref|YP_003776852.1| transcription regulator protein... 121 2e-29 gi|300313266|ref|YP_003777358.1| AsnC family transcription regul... 96 1e-21 gi|300312130|ref|YP_003776222.1| glutamate uptake transcription ... 89 1e-19 gi|300311006|ref|YP_003775098.1| transcription regulator protein... 87 7e-19 >gi|300313708|ref|YP_003777800.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 318 bits (814), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 158/159 (99%), Positives = 158/159 (99%) Query: 1 MTFELDDLDRRILKALQADASQTNQELAARVHASPPTCLRRVKRLVEGGVIARQVALLDA 60 MTFELDDLDRRILKALQADASQTNQELAARVHASPPTCLRRVKRLVEGGVIARQVALLDA Sbjct: 1 MTFELDDLDRRILKALQADASQTNQELAARVHASPPTCLRRVKRLVEGGVIARQVALLDA 60 Query: 61 QKVAAALTAVVEITLDRQGEEEQQAFEALVADEPAVQQCYRVSPGPDFVLVVLVRDMPSY 120 QKVAAALTAVVEITLDRQGEEEQQAFEALVADEPAVQQCYRVSPGPDFVLVVLVRDM SY Sbjct: 61 QKVAAALTAVVEITLDRQGEEEQQAFEALVADEPAVQQCYRVSPGPDFVLVVLVRDMSSY 120 Query: 121 HALAHRLFASQRNVRNVRSYFSIHRSKFETAIPIDDAAS 159 HALAHRLFASQRNVRNVRSYFSIHRSKFETAIPIDDAAS Sbjct: 121 HALAHRLFASQRNVRNVRSYFSIHRSKFETAIPIDDAAS 159 >gi|300312760|ref|YP_003776852.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 170 Score = 121 bits (304), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 61/155 (39%), Positives = 94/155 (60%) Query: 5 LDDLDRRILKALQADASQTNQELAARVHASPPTCLRRVKRLVEGGVIARQVALLDAQKVA 64 LD +DR++L LQ D + + LA ++H S PTCLRR++ L E G+I+ +VA++D + Sbjct: 8 LDKVDRKLLNMLQKDNQISTRVLAEKLHISQPTCLRRIRDLREAGIISAEVAMVDPFALG 67 Query: 65 AALTAVVEITLDRQGEEEQQAFEALVADEPAVQQCYRVSPGPDFVLVVLVRDMPSYHALA 124 + A +EI+L+ Q ++ Q FE +A E V QCY VS D+ L V V DM +Y+ Sbjct: 68 YGMLAFLEISLNNQSDQHMQDFEQRMAKEAEVMQCYFVSGEYDYFLAVHVIDMDAYYQFV 127 Query: 125 HRLFASQRNVRNVRSYFSIHRSKFETAIPIDDAAS 159 R+ + NVR+ +S F + R+KF T I D+ A+ Sbjct: 128 RRVISGSGNVRHFQSRFPMKRAKFTTRIAFDEKAA 162 >gi|300313266|ref|YP_003777358.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 96.3 bits (238), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 85/151 (56%) Query: 3 FELDDLDRRILKALQADASQTNQELAARVHASPPTCLRRVKRLVEGGVIARQVALLDAQK 62 ELD D RIL LQ ++S +N ELA+R++ SP L RVKRL G+I+R VAL D Sbjct: 1 MELDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHL 60 Query: 63 VAAALTAVVEITLDRQGEEEQQAFEALVADEPAVQQCYRVSPGPDFVLVVLVRDMPSYHA 122 + + V++ L+RQG E FE V+ V + Y ++ D++L ++V D+ + Sbjct: 61 LGLKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEH 120 Query: 123 LAHRLFASQRNVRNVRSYFSIHRSKFETAIP 153 ++N+RS F++ + K++TA+P Sbjct: 121 FIVDHLTKIPGIKNIRSSFALKQIKYKTALP 151 >gi|300312130|ref|YP_003776222.1| glutamate uptake transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 89.4 bits (220), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 1/150 (0%) Query: 5 LDDLDRRILKALQADASQTNQELAARVHASPPTCLRRVKRLVEGGVIARQVALLDAQKVA 64 +D DRRIL+ LQ D+++ E+A V+ S C RR++RL GVI R+V LLDA+K+ Sbjct: 2 IDRTDRRILEILQEDSTRAVAEIAECVNLSTTPCWRRIQRLEAEGVIKRRVVLLDAEKLN 61 Query: 65 AALTAVVEITLDRQGEEEQQAFEALVADEPAVQQCYRVSPGPDFVLVVLVRDMPSYHALA 124 ++T +VEI + + F +V P V + +R+S D++L V+V ++ +Y ++ Sbjct: 62 VSVTVLVEIKTRQHSASWLKKFRDVVTCIPEVVEVHRMSGHIDYMLKVMVPNIGAYDSVY 121 Query: 125 HRLFASQRNVRNVRSYFSIHRSKFETAIPI 154 RL S + +V S FS+ K TA+P+ Sbjct: 122 KRLI-SAVELDDVSSSFSMETLKSTTALPL 150 >gi|300311006|ref|YP_003775098.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 172 Score = 87.0 bits (214), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 75/153 (49%) Query: 3 FELDDLDRRILKALQADASQTNQELAARVHASPPTCLRRVKRLVEGGVIARQVALLDAQK 62 +D D +L LQ D TN L +VH S RRV+RL E VI R A+LD Sbjct: 4 INVDRYDLALLTELQRDGHITNSALGQKVHLSTSQISRRVQRLEEAHVIERYTAVLDPAV 63 Query: 63 VAAALTAVVEITLDRQGEEEQQAFEALVADEPAVQQCYRVSPGPDFVLVVLVRDMPSYHA 122 V +TA +TLDRQGE + FE V P V +C+ V+ D++L ++ D+ ++ Sbjct: 64 VGLGVTAFTTVTLDRQGETRGELFEKAVETMPEVTECFSVTGEGDYILRIVAPDLAAFSE 123 Query: 123 LAHRLFASQRNVRNVRSYFSIHRSKFETAIPID 155 V NV+S ++ + K +P++ Sbjct: 124 FMMTRLLRLPGVTNVKSNITLKKVKQSHELPLE 156 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.133 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 455,546 Number of extensions: 16884 Number of successful extensions: 79 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 78 Number of HSP's successfully gapped: 9 Length of query: 159 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 81 Effective length of database: 1,250,540 Effective search space: 101293740 Effective search space used: 101293740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)