BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0105.p (406 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313707|ref|YP_003777799.1| alpha-D-mannose-alpha(1-6)phosp... 647 0.0 gi|300313705|ref|YP_003777797.1| glycosyltransferase [Herbaspiri... 469 e-133 gi|300313708|ref|YP_003777800.1| AsnC family transcription regul... 194 8e-51 gi|300312760|ref|YP_003776852.1| transcription regulator protein... 72 1e-13 >gi|300313707|ref|YP_003777799.1| alpha-D-mannose-alpha(1-6)phosphatidyl myo-inositol monomannoside transferase [Herbaspirillum seropedicae SmR1] Length = 348 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/338 (93%), Positives = 323/338 (95%), Gaps = 3/338 (0%) Query: 1 MKILLLNDEFYTTGASIAMLRLAERLVQQHEVMVMPRRDGEGEIRKQFEALGIPIVHNVT 60 MKILLLNDEFYTTGASIAMLRLAERLVQQHEVMVMPRRDGEGEIRKQFEALGIPIVHNVT Sbjct: 1 MKILLLNDEFYTTGASIAMLRLAERLVQQHEVMVMPRRDGEGEIRKQFEALGIPIVHNVT 60 Query: 61 TVDVVVANTLMAGLHVAEAGPKVPVVWWIHEAEVGRDLILRFPALAPAFQHASQIVFQTS 120 TVDVVVANTLMAGLHVAEAGPKVPVVWWIHEAEVGRDLILRFPALAPAFQHASQIVFQTS Sbjct: 61 TVDVVVANTLMAGLHVAEAGPKVPVVWWIHEAEVGRDLILRFPALAPAFQHASQIVFQTS 120 Query: 121 YQQKVYQSFLFDSPASCHVLPFWNDAIYRQEDLGPKPKRGKRIVCIGTIEPRKRMEDTVL 180 YQQKVYQSFLFDSPASCHVLPFWNDAIYRQEDLGPKPKRGKRIVCIGTIEPRKRMEDTVL Sbjct: 121 YQQKVYQSFLFDSPASCHVLPFWNDAIYRQEDLGPKPKRGKRIVCIGTIEPRKRMEDTVL 180 Query: 181 AVEAMPPALREEVECVFIGKYLELPEHARRIADAAPQRYRFLGEQANDEVLRYLASADAY 240 AVEAMPPALREEVECVFIGKYLELPE ARRIADAAPQRYRFLGEQANDEVLRYLASAD Y Sbjct: 181 AVEAMPPALREEVECVFIGKYLELPEQARRIADAAPQRYRFLGEQANDEVLRYLASADTY 240 Query: 241 VLASYSESQPLSIWEAFELEVPVCLSDLETYGHIGLQHGRNALMHPVGQTAVLSANLQQL 300 VLASYSESQPLSIWEAFELEVPVCLSDLETYGHIGLQHGRNALMHPVGQTAVLSANLQQL Sbjct: 241 VLASYSESQPLSIWEAFELEVPVCLSDLETYGHIGLQHGRNALMHPVGQTAVLSANLQQL 300 Query: 301 LTRPTLARELARALTAVVEITLDRQGEEEQQAFEALVA 338 LTRPTLARELARA +++ L R +E FE ++A Sbjct: 301 LTRPTLARELARAGKSLLLKNLTRDWADE---FERIIA 335 >gi|300313705|ref|YP_003777797.1| glycosyltransferase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 469 bits (1208), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/338 (67%), Positives = 271/338 (80%), Gaps = 4/338 (1%) Query: 1 MKILLLNDEFYTTGASIAMLRLAERLVQQHEVMVMPRRDGEGEIRKQFEALGIPIVHNVT 60 MKILLLNDEFYTTGAS AMLRLAERLVQ HEV V+PR DG+GEIRKQFEALGIPIV ++ Sbjct: 1 MKILLLNDEFYTTGASTAMLRLAERLVQNHEVSVLPRIDGQGEIRKQFEALGIPIVKDLA 60 Query: 61 TV-DVVVANTLMAGLHVAEAGPKVPVVWWIHEAEVGRDLILRFPALAPAFQHASQIVFQT 119 D++V+N +++G V E P+ PV+WW+HEAEVGRDL+LR+P +A F+ AS IVFQT Sbjct: 61 GEPDLIVSNCILSGSLVGELAPRCPVIWWVHEAEVGRDLLLRYPQMAQGFKSASHIVFQT 120 Query: 120 SYQQKVYQSFLFDSPASCHVLPFWNDAIYRQEDLGPKPKRGKRIVCIGTIEPRKRMEDTV 179 +Q+ VY SFLFDSPA HVLPFWNDAIYRQ+DL PKPK KRIVCIGTIEPRKRMEDT+ Sbjct: 121 EFQRIVYGSFLFDSPAMVHVLPFWNDAIYRQQDLQPKPKDKKRIVCIGTIEPRKRMEDTI 180 Query: 180 LAVEAMPPALREEVECVFIGKYLELPEHARRIADAAPQRYRFLGEQANDEVLRYLASADA 239 LAV AM A R E+ECVFIGKYL+L + AR++A+A P+RYRFLGEQ N+E LRYLASADA Sbjct: 181 LAVNAMSSAQRAEIECVFIGKYLQLGDGARKLAEALPERYRFLGEQPNEETLRYLASADA 240 Query: 240 YVLASYSESQPLSIWEAFELEVPVCLSDLETYGHIGLQHGRNALMHPVGQTAVLSANLQQ 299 YVLAS SESQPL+IWEAFELEVPVCLSDLETY HIGL+HG NA+MHP+G +L++NLQ Sbjct: 241 YVLASSSESQPLTIWEAFELEVPVCLSDLETYRHIGLKHGVNAMMHPMGNMELLASNLQM 300 Query: 300 LLTRPTLARELARALTAVVEITLDRQGEEEQQAFEALV 337 +L + R + RA +++ L + AFE L+ Sbjct: 301 VLYHDDVRRRITRAGKSLL---LKNLTSDWADAFERLI 335 >gi|300313708|ref|YP_003777800.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 194 bits (494), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 95/100 (95%), Positives = 98/100 (98%) Query: 307 ARELARALTAVVEITLDRQGEEEQQAFEALVADEPAVQQCYRVSPGPDFVLVVLVRDMPS 366 A+++A ALTAVVEITLDRQGEEEQQAFEALVADEPAVQQCYRVSPGPDFVLVVLVRDM S Sbjct: 60 AQKVAAALTAVVEITLDRQGEEEQQAFEALVADEPAVQQCYRVSPGPDFVLVVLVRDMSS 119 Query: 367 YHALAHRLFASQRNVRNVRSYFSIHRSKFETAIPIDDAAS 406 YHALAHRLFASQRNVRNVRSYFSIHRSKFETAIPIDDAAS Sbjct: 120 YHALAHRLFASQRNVRNVRSYFSIHRSKFETAIPIDDAAS 159 >gi|300312760|ref|YP_003776852.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 170 Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 55/97 (56%) Query: 310 LARALTAVVEITLDRQGEEEQQAFEALVADEPAVQQCYRVSPGPDFVLVVLVRDMPSYHA 369 L + A +EI+L+ Q ++ Q FE +A E V QCY VS D+ L V V DM +Y+ Sbjct: 66 LGYGMLAFLEISLNNQSDQHMQDFEQRMAKEAEVMQCYFVSGEYDYFLAVHVIDMDAYYQ 125 Query: 370 LAHRLFASQRNVRNVRSYFSIHRSKFETAIPIDDAAS 406 R+ + NVR+ +S F + R+KF T I D+ A+ Sbjct: 126 FVRRVISGSGNVRHFQSRFPMKRAKFTTRIAFDEKAA 162 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,178,716 Number of extensions: 46058 Number of successful extensions: 147 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 147 Number of HSP's successfully gapped: 4 Length of query: 406 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 319 Effective length of database: 1,207,925 Effective search space: 385328075 Effective search space used: 385328075 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)