BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0095.p
         (195 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313700|ref|YP_003777792.1| sedoheptulose 7-phosphate isome...   392   e-111
gi|300313953|ref|YP_003778045.1| phosphoheptose isomerase [Herba...   148   3e-37

>gi|300313700|ref|YP_003777792.1| sedoheptulose 7-phosphate
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 195

 Score =  392 bits (1007), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/195 (100%), Positives = 195/195 (100%)

Query: 1   MSSPLLRLQRNLDASIRAKQQLMQESATLAVFDAAVAATIAAYRNGRRIYIAGNGGSAAD 60
           MSSPLLRLQRNLDASIRAKQQLMQESATLAVFDAAVAATIAAYRNGRRIYIAGNGGSAAD
Sbjct: 1   MSSPLLRLQRNLDASIRAKQQLMQESATLAVFDAAVAATIAAYRNGRRIYIAGNGGSAAD 60

Query: 61  AQHLAAEFVSKLARDRAPLPAEALTTDSSILTAIGNDYGYEQVFSRQLAGKAVAGDIFLG 120
           AQHLAAEFVSKLARDRAPLPAEALTTDSSILTAIGNDYGYEQVFSRQLAGKAVAGDIFLG
Sbjct: 61  AQHLAAEFVSKLARDRAPLPAEALTTDSSILTAIGNDYGYEQVFSRQLAGKAVAGDIFLG 120

Query: 121 ITTSGRSPNILRALEQCRAMGVPSILFTGRDGGPARPLADHAIVVPGEATSTIQELHIVL 180
           ITTSGRSPNILRALEQCRAMGVPSILFTGRDGGPARPLADHAIVVPGEATSTIQELHIVL
Sbjct: 121 ITTSGRSPNILRALEQCRAMGVPSILFTGRDGGPARPLADHAIVVPGEATSTIQELHIVL 180

Query: 181 AHTLCESVEAALFGE 195
           AHTLCESVEAALFGE
Sbjct: 181 AHTLCESVEAALFGE 195


>gi|300313953|ref|YP_003778045.1| phosphoheptose isomerase
           [Herbaspirillum seropedicae SmR1]
          Length = 198

 Score =  148 bits (373), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 85/200 (42%), Positives = 119/200 (59%), Gaps = 11/200 (5%)

Query: 1   MSSP--LLRLQRNLDASIRAKQQLMQESATLAVFDAAVAATIAAYRNGRRIYIAGNGGSA 58
           M++P  L   Q + D  ++A   L Q        + A+     A  NG +I   GNGGSA
Sbjct: 1   MTNPRILAHFQESADLKMKAASVLAQP------IEQAIELMFTALSNGNKILACGNGGSA 54

Query: 59  ADAQHLAAEFVSKLARDRAPLPAEALTTDSSILTAIGNDYGYEQVFSRQLAGKAVAGDIF 118
           AD+QH AAE V +  R+R PLPA ALTTD+SILTA+GNDY Y+++FS+Q+     +GDI 
Sbjct: 55  ADSQHFAAELVGRFERERLPLPALALTTDTSILTAVGNDYSYQEIFSKQVQAFGQSGDIL 114

Query: 119 LGITTSGRSPNILRALEQCRAMGVPSILFTGRDGGPARPL---ADHAIVVPGEATSTIQE 175
           L  +TSG S NIL A+E      +  +  TG+ GG    +   AD  I VP + T+ IQE
Sbjct: 115 LAFSTSGNSGNILAAIEVAHERDMRVVALTGKGGGKIGKVLNDADVHICVPHDRTARIQE 174

Query: 176 LHIVLAHTLCESVEAALFGE 195
           +H+V  H +C+ ++ ALFG+
Sbjct: 175 VHLVTLHCICDGIDVALFGD 194


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 575,664
Number of extensions: 23470
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 2
Length of query: 195
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 115
Effective length of database: 1,241,070
Effective search space: 142723050
Effective search space used: 142723050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)