BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0094.p
         (240 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313699|ref|YP_003777791.1| phospho-sugar nucleotidyltransf...   486   e-139
gi|300310038|ref|YP_003774130.1| nucleoside-diphosphate-sugar py...    56   2e-09

>gi|300313699|ref|YP_003777791.1| phospho-sugar
           nucleotidyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score =  486 bits (1250), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 239/240 (99%), Positives = 239/240 (99%)

Query: 1   MTIQSAVILAGGLGTRLRSAVPDLPKPMAPIEGRPFLEYQLDYWIAQGIAHFVLAVGYRH 60
           MTIQSAVILAGGLGTRLRSAVPDLPKPMAPIEGRPFLEYQLDYWIAQGIAHFVLAVGYRH
Sbjct: 1   MTIQSAVILAGGLGTRLRSAVPDLPKPMAPIEGRPFLEYQLDYWIAQGIAHFVLAVGYRH 60

Query: 61  EAISGHFGQQYRGARLDYVVEETPLGTGGGLLLALQRLPADQRFLLLNGDTYFAVQLPAL 120
           EAISGHFGQQYRGARLDYVVEETPLGTGGGLLLALQRLPADQRFLLLNGDTYFAVQLPAL
Sbjct: 61  EAISGHFGQQYRGARLDYVVEETPLGTGGGLLLALQRLPADQRFLLLNGDTYFAVQLPAL 120

Query: 121 EQFALQQDSDWCFSLFRTGQTSRYLGMGVAADGRITELKSSQDGDECLANGGVYCIHPRA 180
           EQFALQQDSDWCFSLFRTGQTSRYLGMGVAADGRITELKSSQDGDECLANGGVYCIHPRA
Sbjct: 121 EQFALQQDSDWCFSLFRTGQTSRYLGMGVAADGRITELKSSQDGDECLANGGVYCIHPRA 180

Query: 181 LASLGVQAGASTSLENDLFPRAFAAGQRMVGLEFGGSFIDIGIPDDYHRAATVLNAKETP 240
           LASLGVQAGASTSLENDLFPRAFAAGQRMVGLEF GSFIDIGIPDDYHRAATVLNAKETP
Sbjct: 181 LASLGVQAGASTSLENDLFPRAFAAGQRMVGLEFDGSFIDIGIPDDYHRAATVLNAKETP 240


>gi|300310038|ref|YP_003774130.1| nucleoside-diphosphate-sugar
           pyrophosphorylase subunits gamma/epsilon [Herbaspirillum
           seropedicae SmR1]
          Length = 238

 Score = 56.2 bits (134), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 5   SAVILAGGLGTRLRSAVPDLPKPMAPIEGRPFLEYQLDYWIAQGIAHFVLAVGYRHEAIS 64
            A+I A G G R+R      PKP+  + GRP + +Q+   +  GI   V+   +  + I 
Sbjct: 2   KAMIFAAGRGERMRPLTDSCPKPLLKVRGRPLIVWQILSLVRAGITEIVINHAHLGQMIE 61

Query: 65  GHFGQQYR-GARLDYVVEETPLGTGGGLLLALQRLPADQRFLLLNGDTY 112
              G   R GARL Y  E T L T GG+  A + L  +Q F+ ++GD +
Sbjct: 62  DTLGDGSRFGARLLYSPEGTALETAGGIAQA-RHLLGEQPFIAVSGDIW 109


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 740,594
Number of extensions: 30494
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 240
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,226,865
Effective search space: 192617805
Effective search space used: 192617805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)