BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0084.p
         (357 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313691|ref|YP_003777783.1| CDP-glucose-4,6-dehydratase [He...   743   0.0  
gi|300313504|ref|YP_003777596.1| galactose-1-phosphate uridylylt...    67   2e-12
gi|300313692|ref|YP_003777784.1| UDP-glucose 4-epimerase [Herbas...    63   3e-11

>gi|300313691|ref|YP_003777783.1| CDP-glucose-4,6-dehydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 357

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/357 (100%), Positives = 357/357 (100%)

Query: 1   MANFWRDKRVFITGHTGFKGSWLTLWLHLMGAKVSGYSLPAPTSPSLFHLARLHNCVQTT 60
           MANFWRDKRVFITGHTGFKGSWLTLWLHLMGAKVSGYSLPAPTSPSLFHLARLHNCVQTT
Sbjct: 1   MANFWRDKRVFITGHTGFKGSWLTLWLHLMGAKVSGYSLPAPTSPSLFHLARLHNCVQTT 60

Query: 61  TGDVRDPKHLAETMAAVQPDVVFHLAGQPQIEHSYLTPLDTFATNVMGTAHLLEAVRSTP 120
           TGDVRDPKHLAETMAAVQPDVVFHLAGQPQIEHSYLTPLDTFATNVMGTAHLLEAVRSTP
Sbjct: 61  TGDVRDPKHLAETMAAVQPDVVFHLAGQPQIEHSYLTPLDTFATNVMGTAHLLEAVRSTP 120

Query: 121 SVRAVVVVSSNKCYENREWLWGYREDDPMGGHDPFSSSKGAAELVTAAYRRSFFSADPDS 180
           SVRAVVVVSSNKCYENREWLWGYREDDPMGGHDPFSSSKGAAELVTAAYRRSFFSADPDS
Sbjct: 121 SVRAVVVVSSNKCYENREWLWGYREDDPMGGHDPFSSSKGAAELVTAAYRRSFFSADPDS 180

Query: 181 PVGVASVRTGNVIGGGDFAADRLIPDFIRALETDQPVTIRQPHAVRPWQFVLEPLSGYLQ 240
           PVGVASVRTGNVIGGGDFAADRLIPDFIRALETDQPVTIRQPHAVRPWQFVLEPLSGYLQ
Sbjct: 181 PVGVASVRTGNVIGGGDFAADRLIPDFIRALETDQPVTIRQPHAVRPWQFVLEPLSGYLQ 240

Query: 241 IGKMLYEHGASYAEAWNFGPTDTDLQTVSQLCATFNHSLQKNDVEPVEVRLEQAGATLSE 300
           IGKMLYEHGASYAEAWNFGPTDTDLQTVSQLCATFNHSLQKNDVEPVEVRLEQAGATLSE
Sbjct: 241 IGKMLYEHGASYAEAWNFGPTDTDLQTVSQLCATFNHSLQKNDVEPVEVRLEQAGATLSE 300

Query: 301 AVLRLDTSKARQRLDWIPRMELYTALELTAQWYAGYLNNEDLRALSENQIAFYQSLT 357
           AVLRLDTSKARQRLDWIPRMELYTALELTAQWYAGYLNNEDLRALSENQIAFYQSLT
Sbjct: 301 AVLRLDTSKARQRLDWIPRMELYTALELTAQWYAGYLNNEDLRALSENQIAFYQSLT 357


>gi|300313504|ref|YP_003777596.1| galactose-1-phosphate
           uridylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 98/224 (43%), Gaps = 28/224 (12%)

Query: 4   FWRDKRVFITGHTG-FKGSWLTLWLHLMGAKVSGYSLPAPTSPSLFHLARLHNCVQTTTG 62
            + D  + ITG TG F  + L  +L+    ++  +S        L  +A  +  ++   G
Sbjct: 1   MFDDSVLMITGGTGSFGQTVLNRFLNTGVREIRVFSRDEKKQEDL-RIALNNEKLRFYIG 59

Query: 63  DVRDPKHLAETMAAVQPDVVFHLAGQPQIEHSYLTPLDTFATNVMGTAHLLEAVRSTPSV 122
           DVRDP  L   M  V  D VFH A   Q+      P++   TNV+GT ++L  V S   V
Sbjct: 60  DVRDPDSLRAAMKGV--DYVFHAAALKQVPSCEFYPMEAVKTNVIGTENVLR-VSSECGV 116

Query: 123 RAVVVVSSNKCYENREWLWGYREDDPMGGHDPFSSSKGAAELVTAAYRRSFFSADPDSPV 182
           R VVV+S++K               P+   +    SK  AE V  A  R+          
Sbjct: 117 RRVVVLSTDKAVY------------PI---NAMGISKAMAEKVMVAAART----QRQGET 157

Query: 183 GVASVRTGNVIGGGDFAADRLIPDFIRALETDQPVTIRQPHAVR 226
              + R GNV+     +   +IP F+  ++ ++P+TI  P+  R
Sbjct: 158 VFCATRYGNVMA----SRGSVIPLFVSQIKAEKPITITDPNMTR 197


>gi|300313692|ref|YP_003777784.1| UDP-glucose 4-epimerase
           [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 12/174 (6%)

Query: 10  VFITGHTGFKGSWLTLWLHLMGAKVSGYSLPAPTSPSLFHLARLHNCVQTT----TGDVR 65
           + +TG  G+ GS   + L   G +V  +     +SP    + R+      T     GD+R
Sbjct: 3   ILVTGGAGYIGSHTCVELLKAGHEVIVFDNFCNSSPE--SVKRVQQITGKTLSLVKGDIR 60

Query: 66  DPKHLAETMAAVQPDVVFHLAGQPQIEHSYLTPLDTFATNVMGTAHLLEAVRSTPSVRAV 125
           + + L   +   + + V H AG   +  S   PL  +  NV+GT  LLEA+++T  V+ +
Sbjct: 61  NREQLESVLREFKCEAVIHFAGLKAVGESVEQPLMYYDNNVVGTVRLLEAMQAT-GVKTI 119

Query: 126 VVVSSNKCYENREWLWGYREDDPMGGHDPFSSSKGAAELVTAAYRRSFFSADPD 179
           V  SS   Y + ++L    E  P+   +P+  SK    +V     R ++ A PD
Sbjct: 120 VFSSSATVYGDPQYL-PLDEAHPLSASNPYGRSK----IVIEDMLRDYYRAHPD 168


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,197,761
Number of extensions: 50645
Number of successful extensions: 159
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 3
Length of query: 357
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 271
Effective length of database: 1,212,660
Effective search space: 328630860
Effective search space used: 328630860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)