BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0078.p
         (207 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313686|ref|YP_003777778.1| transmembrane protein [Herbaspi...   408   e-115
gi|300313750|ref|YP_003777842.1| transmembrane protein [Herbaspi...   142   2e-35

>gi|300313686|ref|YP_003777778.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 210

 Score =  408 bits (1049), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1   VAGKAVVAAADVRHRSYEDVLALVAGTLFISLGVNMYTQVGLLTGSTAGLAFLAHYLTGL 60
           VAGKAVVAAADVRHRSYEDVLALVAGTLFISLGVNMYTQVGLLTGSTAGLAFLAHYLTGL
Sbjct: 4   VAGKAVVAAADVRHRSYEDVLALVAGTLFISLGVNMYTQVGLLTGSTAGLAFLAHYLTGL 63

Query: 61  PFGAVFFTINLPFYYFAWRRMGKRFMLKTFCAVALVSGFSLMHPYFISYGKLDLFYSAVL 120
           PFGAVFFTINLPFYYFAWRRMGKRFMLKTFCAVALVSGFSLMHPYFISYGKLDLFYSAVL
Sbjct: 64  PFGAVFFTINLPFYYFAWRRMGKRFMLKTFCAVALVSGFSLMHPYFISYGKLDLFYSAVL 123

Query: 121 GGLLIGVGFVMLFRHGASLGGINVVTLFLQDRYGLRAGKLQMGVDVVIVLCSLWVVAPKV 180
           GGLLIGVGFVMLFRHGASLGGINVVTLFLQDRYGLRAGKLQMGVDVVIVLCSLWVVAPKV
Sbjct: 124 GGLLIGVGFVMLFRHGASLGGINVVTLFLQDRYGLRAGKLQMGVDVVIVLCSLWVVAPKV 183

Query: 181 LLASILGAVTANLIIALNHRAGRYMGM 207
           LLASILGAVTANLIIALNHRAGRYMGM
Sbjct: 184 LLASILGAVTANLIIALNHRAGRYMGM 210


>gi|300313750|ref|YP_003777842.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 233

 Score =  142 bits (357), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/198 (39%), Positives = 118/198 (59%)

Query: 8   AAADVRHRSYEDVLALVAGTLFISLGVNMYTQVGLLTGSTAGLAFLAHYLTGLPFGAVFF 67
           AA+ VRH   +++     G + ++ G++M   +GL+ G  AG+AFL  Y +G+ FG  F 
Sbjct: 34  AASPVRHSWIDNLQGQFFGVVMVAFGMSMLHSLGLIIGQIAGVAFLVSYGSGISFGLAFT 93

Query: 68  TINLPFYYFAWRRMGKRFMLKTFCAVALVSGFSLMHPYFISYGKLDLFYSAVLGGLLIGV 127
            INLPFY  A  RMG  F  +T  AV  VS  + +   +ISY  LD    AVL GL +G+
Sbjct: 94  LINLPFYLLAALRMGAAFTWRTLAAVTAVSLLTNIAGNYISYRHLDPAVGAVLAGLCVGI 153

Query: 128 GFVMLFRHGASLGGINVVTLFLQDRYGLRAGKLQMGVDVVIVLCSLWVVAPKVLLASILG 187
           G + LFRH AS GG++++  ++Q+R G +AG L MG D+ +   + W +  + +L S+ G
Sbjct: 154 GLIALFRHQASCGGMSILAAYVQERTGFKAGWLLMGFDLALFATAAWFLPMERVLYSLAG 213

Query: 188 AVTANLIIALNHRAGRYM 205
           A+T NL +A NHR   Y+
Sbjct: 214 AITMNLFVAWNHRYEWYI 231


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.145    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 570,370
Number of extensions: 21534
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 207
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,236,335
Effective search space: 155778210
Effective search space used: 155778210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)