BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0060.p
         (120 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313660|ref|YP_003777752.1| endoribonuclease L-PSP protein ...   227   2e-61
gi|300311291|ref|YP_003775383.1| endoribonuclease L-PSP protein ...    83   6e-18
gi|300310470|ref|YP_003774562.1| translation initiation inhibito...    53   8e-09

>gi|300313660|ref|YP_003777752.1| endoribonuclease L-PSP protein
           [Herbaspirillum seropedicae SmR1]
          Length = 116

 Score =  227 bits (579), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 114/116 (98%), Positives = 114/116 (98%)

Query: 5   MNKIERFNTNARMSQLVIANGFAFVSGQVPDHAGAPIPQQAAEVLAKNDAQLQAQGIGRE 64
           MNKIERFNTNARMSQLVIANGFAFVSGQVPDHAGAPI QQAAEVLAK DAQLQAQGIGRE
Sbjct: 1   MNKIERFNTNARMSQLVIANGFAFVSGQVPDHAGAPIAQQAAEVLAKIDAQLQAQGIGRE 60

Query: 65  RIVSANVWLSSPEHFAAFNAVWEAWLPAGHAPTRACVQALLMLPGLDVEVAVVAAV 120
           RIVSANVWLSSPEHFAAFNAVWEAWLPAGHAPTRACVQALLMLPGLDVEVAVVAAV
Sbjct: 61  RIVSANVWLSSPEHFAAFNAVWEAWLPAGHAPTRACVQALLMLPGLDVEVAVVAAV 116


>gi|300311291|ref|YP_003775383.1| endoribonuclease L-PSP protein
           [Herbaspirillum seropedicae SmR1]
          Length = 116

 Score = 82.8 bits (203), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 65/112 (58%)

Query: 8   IERFNTNARMSQLVIANGFAFVSGQVPDHAGAPIPQQAAEVLAKNDAQLQAQGIGRERIV 67
           ++R +   R+S++ I NG  +++GQ+ +     I  Q  EVL   D  L   G  + +I+
Sbjct: 3   VQRLHVGNRLSEVAIHNGTVYLAGQIAEDTTQNIEGQTREVLGHIDRLLAEAGSDKSKIL 62

Query: 68  SANVWLSSPEHFAAFNAVWEAWLPAGHAPTRACVQALLMLPGLDVEVAVVAA 119
           S  ++LS  + FA  NAVW+ W+  G+AP RA V+A L  P L VE+ +VAA
Sbjct: 63  SCQIFLSDVKDFAGMNAVWDEWVAPGNAPPRATVEAKLARPELLVEIIIVAA 114


>gi|300310470|ref|YP_003774562.1| translation initiation inhibitor
           protein [Herbaspirillum seropedicae SmR1]
          Length = 138

 Score = 52.8 bits (125), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 9/124 (7%)

Query: 2   PLTMNKIERFNTNARMSQLVIANGFAFVSGQVP-DHAGAPIPQ-----QAAEVLAKNDAQ 55
           P+T N           S +   NG AF+SGQ+P D  G  + +     QA +VLA  +A 
Sbjct: 15  PVTHNPAGLATPGGHYSHVATGNGMAFISGQLPIDAHGNKLAEASFDVQARQVLANVEAA 74

Query: 56  LQAQGIGRERIVSANVWLSSPEHFAAFNAVWEAWLPAGHA-PTRACVQALLMLPGLDVEV 114
           L   G    +++   V+L+   H+ AFN ++ AW  AG A P RA V    +  GL +EV
Sbjct: 75  LAGVGSEIGKLLQVRVYLTDVAHWPAFNDLYAAW--AGSARPARAVVPVPALHFGLQIEV 132

Query: 115 AVVA 118
              A
Sbjct: 133 EATA 136


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 402,915
Number of extensions: 15559
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 3
Length of query: 120
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,269,480
Effective search space: 58396080
Effective search space used: 58396080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)