BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0056.p
         (294 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313656|ref|YP_003777748.1| dTDP-4-dehydrorhamnose reductas...   589   e-169
gi|300313503|ref|YP_003777595.1| dTDP-4-dehydrorhamnose reductas...    68   1e-12

>gi|300313656|ref|YP_003777748.1| dTDP-4-dehydrorhamnose reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  589 bits (1518), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 291/294 (98%), Positives = 292/294 (99%)

Query: 1   MLARHGELLAPSSRELDLADRQALQSFLQQARPGLIVNAAAYTAVDKAESDVARAEAVNA 60
           MLARHGELLAPSSRELDLADRQALQSFLQQARPGLIVNAAAYTAVDKAESDVARAEAVNA
Sbjct: 19  MLARHGELLAPSSRELDLADRQALQSFLQQARPGLIVNAAAYTAVDKAESDVARAEAVNA 78

Query: 61  LAPMILAQQAQMLGAPLVHFSTDYVFDGKSARPYVETDPTGPLNVYGRTKLAGEQGIAAH 120
           LAPMILAQQAQMLGAPLVHFSTDYVFDGKSARPYVETDPTGPLNVYGRTKLAGEQGIAAH
Sbjct: 79  LAPMILAQQAQMLGAPLVHFSTDYVFDGKSARPYVETDPTGPLNVYGRTKLAGEQGIAAH 138

Query: 121 CDAYWILRTSWVYGRYGSNFLKTMWRLAGEREYLTVVDDQIGAPTWTHTIADTLARMLAH 180
           CDAYWILRTSWVYG YGSNFLKTMWRLAGEREYLTVVDDQIGAPTWTHTIADTLARMLAH
Sbjct: 139 CDAYWILRTSWVYGCYGSNFLKTMWRLAGEREYLTVVDDQIGAPTWTHTIADTLARMLAH 198

Query: 181 GADAQQSVRETTGLYHLSAGGATSWHGFAQRILQLLRAQGETALLDPALVRPIASDAYPA 240
           GADAQQSVR+TTGLYHLSAGGATSWHGFAQRILQLLRAQGETALLDPALVRPIASDAYPA
Sbjct: 199 GADAQQSVRDTTGLYHLSAGGATSWHGFAQRILQLLRAQGETALLDPALVRPIASDAYPA 258

Query: 241 IAQRPRNSRLDTGLLRRTFSLSLPTWEEALERCLHAPSLRDGQGQASGTPTPGL 294
           IAQRPRNSRLDTGLLRRTFSLSLPTWEEALERCLHAPSLRDG GQASGTPTPGL
Sbjct: 259 IAQRPRNSRLDTGLLRRTFSLSLPTWEEALERCLHAPSLRDGPGQASGTPTPGL 312


>gi|300313503|ref|YP_003777595.1| dTDP-4-dehydrorhamnose reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 285

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 69/146 (47%), Gaps = 5/146 (3%)

Query: 3   ARHGELLAPSSRELDLADRQALQSFLQQARPGLIVNAAAYTAVDKAESDVARAEAVNALA 62
           A+  E+ AP    +DL+++  ++    Q RP ++VN A  T      +    A  +NAL 
Sbjct: 34  AKTFEVGAPVVTGIDLSNQDHMERLFAQRRPDVVVNCAGLTKHLPEGNAHIPALTMNALL 93

Query: 63  PMILAQQAQMLGAPLVHFSTDYVFDGKSARPYVETDPTGPLNVYGRTKLAGEQGIAAHCD 122
           P  LAQ   +  A L+H STD VF G +   Y E D     +VYGRTK  GE        
Sbjct: 94  PHRLAQLCDIADARLIHVSTDCVFSGDAGN-YKEQDTPDATDVYGRTKALGE----VTAG 148

Query: 123 AYWILRTSWVYGRYGSNFLKTMWRLA 148
               LRTS +   +G+ F    W LA
Sbjct: 149 NALTLRTSTIGHEHGTQFGLLEWFLA 174


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,028,713
Number of extensions: 44690
Number of successful extensions: 168
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 2
Length of query: 294
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 210
Effective length of database: 1,222,130
Effective search space: 256647300
Effective search space used: 256647300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)