BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0055.p
         (261 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313655|ref|YP_003777747.1| signal peptide protein [Herbasp...   508   e-145
gi|300313766|ref|YP_003777858.1| alpha/beta hydrolase superfamil...   199   2e-52
gi|300311758|ref|YP_003775850.1| alpha/beta hydrolase superfamil...    71   1e-13

>gi|300313655|ref|YP_003777747.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 261

 Score =  508 bits (1307), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 259/261 (99%), Positives = 260/261 (99%)

Query: 1   MQASSRLFNLKTTLGALAVAAAFSAAGPASAAPAEQASVVIVHGAFADGSDWAKVIPLLQ 60
           MQASSRLFNLKT LGALAVAAAFSAAGPASAAPAEQASVVIVHGAFADGSDWAKVIPLLQ
Sbjct: 1   MQASSRLFNLKTALGALAVAAAFSAAGPASAAPAEQASVVIVHGAFADGSDWAKVIPLLQ 60

Query: 61  AKGVKVTAVQNPLTSLADDVAAARRAIDNQPGKVVLVGHSWGGTVITEAGNHDKVASLVY 120
           AKGVKVTAVQNPLTSLADDVAAARRAIDNQPGKVVLVGHSWGGTVITEAGNHDKVASLVY
Sbjct: 61  AKGVKVTAVQNPLTSLADDVAAARRAIDNQPGKVVLVGHSWGGTVITEAGNHDKVASLVY 120

Query: 121 VAAFAPDAGQATGDLGKDLPVPPGIAKLSVDKAGFASLPPAALAADFAQDVPAKQAAVMA 180
           VAAFAPDAGQATGDLGKDLPVPPGIAKLSVDKAGFASLPPAALAADFAQDVPAKQAAVMA
Sbjct: 121 VAAFAPDAGQATGDLGKDLPVPPGIAKLSVDKAGFASLPPAALAADFAQDVPAKQAAVMA 180

Query: 181 ATQGPIAMKAFGDKVETAAWKTRPSWYIVSTKDRMIQPALERSFAKQINAKTTELPASHV 240
           ATQGPIAMKAFGDKVETAAWKTRPSWYIVSTKDRMIQPALER+FAKQINAKTTELPASHV
Sbjct: 181 ATQGPIAMKAFGDKVETAAWKTRPSWYIVSTKDRMIQPALERAFAKQINAKTTELPASHV 240

Query: 241 PQQSRPADVAKVILEAVAASK 261
           PQQSRPADVAKVILEAVAASK
Sbjct: 241 PQQSRPADVAKVILEAVAASK 261


>gi|300313766|ref|YP_003777858.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score =  199 bits (506), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 107/216 (49%), Positives = 143/216 (66%), Gaps = 3/216 (1%)

Query: 39  VVIVHGAFADGSDWAKVIPLLQAKGVKVTAVQNPLTSLADDVAAARRAIDNQPGKVVLVG 98
           +V+VHGAFADGS W++VI LLQ KG +VTAVQNPL+SLADDV+A RR ID QP +V+LVG
Sbjct: 24  IVLVHGAFADGSSWSQVIALLQQKGYRVTAVQNPLSSLADDVSATRRVIDRQPHEVLLVG 83

Query: 99  HSWGGTVITEAGNHDKVASLVYVAAFAPDAGQATGDLGKDLPVPPGIAKLSVDKAGFASL 158
           HSWGG VIT AGN  KV  LVY++A APD+GQ+   + + L  P  ++ +  D  G   L
Sbjct: 84  HSWGGAVITAAGNASKVRGLVYLSALAPDSGQSVAQMLQRLHAP--MSGMQPDADGLIWL 141

Query: 159 PPAALAAD-FAQDVPAKQAAVMAATQGPIAMKAFGDKVETAAWKTRPSWYIVSTKDRMIQ 217
             AA  A   A DV  +Q   +AA Q PIA  AFG+ +  AAW+ +PSWY+++  D+ + 
Sbjct: 142 DDAAAYAQVMAGDVSPEQVRHLAAVQQPIAAAAFGEPLVHAAWRDKPSWYLITEGDQALP 201

Query: 218 PALERSFAKQINAKTTELPASHVPQQSRPADVAKVI 253
            A++R  A  + A+T +L +SH+   S P  VA  I
Sbjct: 202 TAVQRKLATLLGARTRQLISSHMSLVSHPQVVADFI 237


>gi|300311758|ref|YP_003775850.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 243

 Score = 70.9 bits (172), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 112/251 (44%), Gaps = 42/251 (16%)

Query: 37  ASVVIVHGAFADGSDWAKVIPLLQAKGVKVTAVQNP-------------LTSLADDVAAA 83
           A+ +++HGA+     W  V   L  +G +V ++  P             L+  AD +  A
Sbjct: 2   ANFLLIHGAWQGKWVWPAVSAELTMRGHEVHSIDLPGSGADTTPLDQVTLSLYADAIVKA 61

Query: 84  RRAIDNQPGKVVLVGHSWGGTVITEAGNH--DKVASLVYVAAFAP---DAGQATGDLG-K 137
            +AI     +V LVGHS GG  +T A     D +A ++Y+ A+ P   D+  A  DL   
Sbjct: 62  IKAIGK---RVTLVGHSMGGIAVTAAAERAADSLARIIYLCAYVPVNGDSLSALSDLAPA 118

Query: 138 DLPVPPGIAKLSVDKAGFAS-LPPAALAADFAQDVPAK---------QAAVMAATQGPIA 187
            LP P  +   ++  A  AS   P+A    F QD P           +A  MA    P+ 
Sbjct: 119 RLPSPVALGHDAL--AALASDTQPSARVETFMQDAPYAVAHWAAPQFRAQAMAPMTTPV- 175

Query: 188 MKAFGDKVETAAWKTRPSWYIVSTKDRMIQPALERSF-AKQINAKTTELPASHVPQQSRP 246
                 +V   A+   P  YIV T+DR I P L+R   A+   ++  EL + H P  SRP
Sbjct: 176 ------QVSEQAYGKLPKSYIVCTRDRAIDPVLQRVMAARSGCSRIKELASDHSPFLSRP 229

Query: 247 ADVAKVILEAV 257
            + A+++   V
Sbjct: 230 TETAEMLHRMV 240


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.126    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 713,755
Number of extensions: 26775
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 3
Length of query: 261
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 178
Effective length of database: 1,226,865
Effective search space: 218381970
Effective search space used: 218381970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)