BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0043.p
         (270 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313643|ref|YP_003777735.1| hypothetical protein Hsero_4359...   560   e-161
gi|300313084|ref|YP_003777176.1| hypothetical protein Hsero_3790...   132   2e-32

>gi|300313643|ref|YP_003777735.1| hypothetical protein Hsero_4359
           [Herbaspirillum seropedicae SmR1]
          Length = 270

 Score =  560 bits (1442), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 269/270 (99%), Positives = 270/270 (100%)

Query: 1   MAKKIGPQFIVHPKFVLKETEASTKPLSSGDKEKDRANVQRLSGLIGLQQQMLYAGHKHK 60
           MAKKIGPQFIVHPKFVLKETEASTKPLSSGDKEKDRANVQRLSGLIG+QQQMLYAGHKHK
Sbjct: 1   MAKKIGPQFIVHPKFVLKETEASTKPLSSGDKEKDRANVQRLSGLIGVQQQMLYAGHKHK 60

Query: 61  VLVVLQGMDTSGKDGTVNDVFAAVNPQGIRISNFKGPTAIELAHDYLWRVHAQVPVAGEI 120
           VLVVLQGMDTSGKDGTVNDVFAAVNPQGIRISNFKGPTAIELAHDYLWRVHAQVPVAGEI
Sbjct: 61  VLVVLQGMDTSGKDGTVNDVFAAVNPQGIRISNFKGPTAIELAHDYLWRVHAQVPVAGEI 120

Query: 121 AVFNRSHYEDVLITRVHDWIDDKECQRRYRQINDFERMLWETGTVVLKFFLHISKAEQKS 180
           AVFNRSHYEDVLITRVHDWIDDKECQRRYRQINDFERMLWETGTVVLKFFLHISKAEQKS
Sbjct: 121 AVFNRSHYEDVLITRVHDWIDDKECQRRYRQINDFERMLWETGTVVLKFFLHISKAEQKS 180

Query: 181 RLQSRIDDPNKHWKFDPQDLAERKFWDAYQTRYQEVLRATSTLHAPWYVVPADSKTHRNL 240
           RLQSRIDDPNKHWKFDPQDLAERKFWDAYQTRYQEVLRATSTLHAPWYVVPADSKTHRNL
Sbjct: 181 RLQSRIDDPNKHWKFDPQDLAERKFWDAYQTRYQEVLRATSTLHAPWYVVPADSKTHRNL 240

Query: 241 VVANVVLETLQKLKLKFPDPKPELKNLKFD 270
           VVANVVLETLQKLKLKFPDPKPELKNLKFD
Sbjct: 241 VVANVVLETLQKLKLKFPDPKPELKNLKFD 270


>gi|300313084|ref|YP_003777176.1| hypothetical protein Hsero_3790
           [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  132 bits (333), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 120/232 (51%), Gaps = 11/232 (4%)

Query: 28  SSGDKEKDRANVQ-----RLSG-LIGLQQQMLYAGHKHKVLVVLQGMDTSGKDGTVNDVF 81
           + G++EK+   +      RL G L+ LQ  ++  GHK  V++V +G D +GK G +  + 
Sbjct: 42  AHGEEEKEYRRLYFRELFRLQGELVKLQDWVVQTGHK--VVIVFEGRDAAGKGGVIKRIT 99

Query: 82  AAVNPQGIRISNFKGPTAIELAHDYLWRVHAQVPVAGEIAVFNRSHYEDVLITRVHDWID 141
             +NP+  R++    P   E    Y  R  + +P AGEI +F+RS Y    + RV  +  
Sbjct: 100 QRLNPRVARVAALPAPNDRERTQWYFQRYVSHLPAAGEIVLFDRSWYNRAGVERVMGFCS 159

Query: 142 DKECQRRYRQINDFERMLWETGTVVLKFFLHISKAEQKSRLQSRIDDPNKHWKFDPQDLA 201
           D++ +  +R + +FERML   G  V+K++  I+  EQ  R  SRI DP K WK  P DL 
Sbjct: 160 DEQYEEFFRSVPEFERMLTRAGIQVIKYWFSITDEEQHLRFLSRIHDPLKQWKLSPMDLE 219

Query: 202 ERKFWDAYQTRYQEVLRATSTLHAPWYVVPADSKTHRNLVVANVVLETLQKL 253
            R+ W+ Y    + +L  T    APW+VV A  K    L   N +   LQ++
Sbjct: 220 SRRRWEEYTKAKEVMLERTHIPEAPWWVVQAVDKKKARL---NCIHHLLQQM 268


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 837,940
Number of extensions: 33030
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 2
Length of query: 270
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,222,130
Effective search space: 227316180
Effective search space used: 227316180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)